HsaINT0076356 @ hg19
Intron Retention
Gene
ENSG00000156515 | HK1
Description
hexokinase 1 [Source:HGNC Symbol;Acc:4922]
Coordinates
chr10:71158351-71161637:+
Coord C1 exon
chr10:71158351-71158584
Coord A exon
chr10:71158585-71160746
Coord C2 exon
chr10:71160747-71161637
Length
2162 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
TGTTTTCTCGTCCTTTTTAGCTT
3' ss Score
11.14
Exon sequences
Seq C1 exon
TGACCGATTAGCACTGCTCCAGGTCCGGGCTATCCTCCAGCAGCTAGGTCTGAATAGCACCTGCGATGACAGTATCCTCGTCAAGACAGTGTGCGGGGTGGTGTCCAGGAGGGCCGCACAGCTGTGTGGCGCAGGCATGGCTGCGGTTGTGGATAAGATCCGCGAGAACAGAGGACTGGACCGTCTGAATGTGACTGTGGGAGTGGACGGGACACTCTACAAGCTTCATCCACA
Seq A exon
GTGAGTGGGCCTTCCAGTTGGGATGCGCAGAGCTTGCTGGGATCCCTTTGGGTTAGGGGGTATCAGGGTGTGGTTTACGCTGGGGAAATGCCCTGCGGGAGCCCAGCCAGGCTGAAGGCTGTGCGTTCAGGAGCTGGGGATTGTCTAGGACAAGGTAATGAACAGTTTGTAGGGTTTGACTGGGATCCTTAGGGAGACAGAGAAGTGGCTTCACTTGGCCAGCTCACACCAGTGGCATGATGTGACCCTCACCCCACTCCTCCTGGTCCCCCTTAGGTGGGGGCTAGGCAGTGGGAGAGGAGGTGAGGGTGGGCGTGGGCTCACTCATAAGCCTGGTGAGCTGTAGCCAGGCCAGAGGCTCTGTTGGGTAAGTGGGGAGAGGATATTAAGAAAGGGGAGGAGCTGGGTGCAGTGGTTCACACCTGTAATCCAGCACTTTGGGAGGCCTAGGTGGGAGGACTGCTTCAGTCCAGGAGTTTGAGACCAGCCTAGGCAACATAGTGAGACCTTGTCTGTACAAAAAAATTTTGAAAATTAGCCAGGGATGGTGGTGAATGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGGAAGAGGATTGCTTGAGCCTGGGAGGTGGAGGTTGCAGTGAGCCCAGATCACGCCACTGTACTCCAGCCTGGGCAACAGAGTGAGACCCTATTTCAAAAAATAAAATAGGAAAGGAGGATAGCCACTCTCTTGTTCATCTGCTGAATCAGTTTGCTAAGACTTGGAAGGGCGGGAGCGGTTTGGGCCCTGGGCTTCATGGCAGGGAGGGGTAGGGAGTGGCCTCCCTCTGGTCAGGCATCTGACCCCCCATGCCAGAGAAGGACATGTGATTGCACTTGCTGTGTGATTGTGATCCACCGCATGTCTCACCTTATGAATAGGGTGACCATATTATTTATTTATTGTCTACACTAGGGTACTCTTGCCAGTCAAGAGTGCTAATAATTATTACTCTGGGACTGTAGGCAAACTAGGACCATCCCAGATAAATGAGGCCATAGTGTCACCCTACTTATAAGCAACCTCACCCGACTCAGTGTAGACATTACCTGCTTACCTCATGGCCGTGGCTTGGGGTGGAACCATCTGTCTTGCTCCATCCTCACCTCTGTCTCTCCCCCTTAATAGCTGTCCTTGCCATCAGCTGAGGCAGCACACAGGAGTGGTTTAGAGCTAGGCTTTGGAGCCACATACTCTTGGATTTAACCCTGGCACCGTCACTTAGAATCTGTGTGCAATTGCTTAATCCCTGCAAAATCTCATCTTCCTCATGAGGTGGCAGCCACTGGCAGGACTAGAAATTAGAGCTGTAAAATATGGGGCACCTAGTAGGTCCTCAAACTCCTTGGCTCAAGTGATCCTCCCACCTTGGCCTCCCAAAGTGCTGGCATGAGCCACCGCACTCCGCCCACCTAATAGGTCCCCAACCAAGGACAGTGACTACTTTTGAGAGCCCCTCACCACAAGCATCTTCAGCCTGGCCCTGCCCTTCATTTTGAGCCCAACTTACAAGCATGTAGATTCAGCCTTTGTTCAGATACTATCTTCACTGGAAGGCATTCCTGTCTTTGGGGGCCAGGCTGTTGATGGTGGGGCGCTGGGGGTCTCAGGGTTGCAGCTGGAGATGGGTGATATTCATTCCTGCATAGCCTCCTGAACCGATCCAGTGCTTGGCTGGCTTGCACCTGCCTTAATGATCCATGTCAGCCCCTAACATCCTCCTTGGTTTTGAGGTCCCCCTGGAGCCTCAAGCTCCGATGTGGGTGTGTGTGTTATTCATGTCCTAGCCTTCATAAGCCATACAGAGCAGTTGTGTTTGGATTCGCAGTTGGGCCTCCCTGCTGAAAACTGTGACAATGGGATTGACCGTGGGCCCACTTTCCTCCCAGCCATTCTCAACTGGCCACAGCTGCTTCTAAGCAGCCTGCCTCCCAACCATGTTCACCCTCCTTGTTGTTGGGTTCAGAGTCTCTTTGACTTCCGATGCTTATGTCCTGATAAACCCATCACAAAGTCGAAGAATCCTAAGTCGAATCATCACCAGTCAGGGGGCTGTCTGTGCTTTGGTGTTTTCGGGTAGGCCCAGCGTCTCTCATCTTCCTCCAACTACCTTCTGTTTTCTCGTCCTTTTTAG
Seq C2 exon
CTTCTCCAGAATCATGCACCAGACGGTGAAGGAACTGTCACCAAAATGTAACGTGTCCTTCCTCCTGTCTGAGGATGGCAGCGGCAAGGGGGCCGCCCTCATCACGGCCGTGGGCGTGCGGTTACGCACAGAGGCAAGCAGCTAAGAGTCCGGGATCCCCAGCCTACTGCCTCTCCAGCACTTCTCTCTTCAAGCGGCGACCCCCTACCCTCCCAGCGAGTTGCGCTGGGAGACGCTGGCGCCAGGGCCTGCCGGCGCGGGGAGGAAAGCAAAATCCAACTAATGGTATATATTGTAGGGTACAGAATAGAGCGTGTGCTGTTGATAATATCTCTCACCCGGATCCCTCCTCACTTGCCCTGCCACTTTGCATGGTTTGATTTTGACCTGGTCCCCCACGTGTGAAGTGTAGTGGCATCCATTTCTAATGTATGCATTCATCCAACAGAGTTATTTATTGGCTGGAGATGGAAAATCACACCACCTGACAGGCCTTCTGGGCCTCCAAAGCCCATCCTTGGGGTTCCCCCTCCCTGTGTGAAATGTATTATCACCAGCAGACACTGCCGGGCCTCCCTCCCGGGGGCACTGCCTGAAGGCGAGTGTGGGCATAGCATTAGCTGCTTCCTCCCCTCCTGGCACCCACTGTGGCCTGGCATCGCATCGTGGTGTGTCAATGCCACAAAATCGTGTGTCCGTGGAACCAGTCCTAGCCGCGTGTGACAGTCTTGCATTCTGTTTGTCTCGTGGGGGGAGGTGGACAGTCCTGCGGAAATGTGTCTTGTCTCCATTTGGATAAAAGGAACCAACCAACAAACAATGCCATCACTGGAATTTCCCACCGCTTTGTGAGCCGTGTCGTATGACCTAGTAAACTTTGTACCAATTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156515-HK1:NM_033496:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(32.5=100)
A:
NA
C2:
PF0372711=Hexokinase_2=PD(16.7=81.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)