MmuINT0077974 @ mm10
Intron Retention
Gene
ENSMUSG00000037012 | Hk1
Description
hexokinase 1 [Source:MGI Symbol;Acc:MGI:96103]
Coordinates
chr10:62269104-62271822:-
Coord C1 exon
chr10:62271589-62271822
Coord A exon
chr10:62270057-62271588
Coord C2 exon
chr10:62269104-62270056
Length
1532 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
CACGTCTTTCGCCTTTGCAGCTT
3' ss Score
10.31
Exon sequences
Seq C1 exon
TGACCGATTAGCGCTGCTCCAGGTGCGGGCCATCCTTCAGCAGCTGGGTCTAAACAGCACGTGCGACGACAGTATCCTGGTCAAGACCGTGTGTGGGGTGGTGTCCAAGCGGGCGGCCCAGCTGTGTGGTGCCGGCATGGCCGCCGTGGTGGAAAAGATCCGAGAGAACAGAGGCCTAGACCACCTGAATGTAACCGTGGGCGTGGACGGGACGCTCTACAAACTCCATCCACA
Seq A exon
GTGAGTGTGGCTTCCTCTCTTGGCTGGGGAGTTGGTTGAGGGTCACAGGGTGTCGGCACAGTTCCTCACGGAGGCATAGTAGCCTGGGGCATTTGGAGACAGGAGCCTGAGACGGTGAGTAGCCCTAGTACTTTGGGGAGCCAGAGGAGGGCTTCAGCTGGGCCAGCCTGCAGGAGTGAAACTCTCCCTGCTTCCCTTTGGCCCTCTGAGGTGTGTGTATGTTTGTGCTATAAGTGTGTGCACTGGCCAGCTGTGCTTGGTAAAAGGAAATTCAGAACGAGGCAGAACAGGAGCAGGGTAGGCCCGGGCTCTGTGGCAGGGAGAAATGTTTTTATCAGAATCATAAGCCCTGTACTTGAGCCCGCTCAAAGCTAGGGTCTTAGGGACAGTGACCACATCTGAACAGAAACCCTGTGCATTGGTTAGCATTCTATAGAGGAAGGGACCTGACAGAATGAATCTATATTCAAAGTAGATCCATCATTCCAGCTAGTCCAACAATGGCTGCCTCCCAACAGAAAGGCCAAGAATCTTATAGTTGTTCAATCCATGAGGCTGGACGTCTTCTGTCTGCATTGGAATCCCGAAGTAGTCATCTTGGGTATCAGTGAGAAGGGATGCCCCCGCAACAGGGTAGATGAGCTTGCCAATGGGAGTGAGGGCAGGAAACAGGCAAAAAAGCAAAAGCTTCCTTGCATGTATGTCCTTTTCTGTGAGCTGTCACCAGAAGGTTGGCCCAGATTTAGGGCACTCTTCTCCGCCCCTTCAAATCATCCAGGCAAGAAAAATCCCACACAGGTGTGCCCTGAATGCTTGGATTTTAGTTAATTCCAGATGCAGTCAAGTTGACAGCCAAAATTAGCAACCACACCCCCTTACCAGTAAGAAGAACACTATTAGCTACCAGACACCATCTCAGCCAAACCGGGCTACAGTCTGACCCAGTGCCCCGGAGACATTTACCCATTTACCTTGTGGCTATGGTGTGGAGCTATCACTTAGAAGCTGTGCCCATCAGGAACGTGGCTCAGTGGGTTGAGCACTTGCCTCTATGCATGAAGCTCTGGATTCTCCCCGAAGTACAACATAAGCCAGGCATCTGAGAGAGTTAAGCTACTCTGGACTGCCATACTTCATAGATTCCAGCTCCTGACTGGACTAGAAATTATGTGAATCGAGTATCATGTATCAGTCTTAGCCATGTTATGACAGTTTTTTTATACAGTTTTTTTGTTGTTGTGTATTTTTGAGGCAGAGTCATGTAGCTCAGGCTAGCCTCAAACTTTATATATAACTGTGGGACACCTTGAATGCATGGTCTTCCTTGCCTCCACCTCCCTAGTTCTGGGACTCAGATTCAGCGGCCTGGGCCTCCTGCATGCTGAGGCAGGCGCTCTACCAGCTGAGTGAGCTGTGTTTGCAGGCCCCCGCTCACCCTTTCTCTAGCACATCTTCCTAATTTCAGTCAACCCCCGGTTCTCGAGCCTCATCTTCCTCCTCTGACCTTCTCCCCACGTCTTTCGCCTTTGCAG
Seq C2 exon
CTTCTCCAGAATCATGCACCAAACAGTGAAGGAACTGTCACCAAAGTGTACCGTGTCCTTCCTCCTGTCTGAAGACGGCAGCGGCAAGGGGGCCGCCCTTATCACAGCTGTGGGCGTGCGGCTCAGAGGAGACCCTACGAACGCCTAAGAGCCAGGATCCTCCCAGCCCCCAGCCCGCCACCCTTCCAGCACTCCTCTCTAGAACCGACGACCACACACCGCCCCCGTGTTCCACCCAGCAAGCTCCGCTGGGAGACCCAGCGCCGGCACCCACTCTGCCGCAGAGGGAGGAAGGGGACTGCAGTAACGGAGCATCACATAGAATACCACCCGGAGCGCGTGCTGTTGATGATCTGATCTCTCGCCTGGACCCCTCATCCCTGCCCTGCCACTTTGCATGATTCAAGTTCGACCTGGCCATGCATTGCCCAAGCGTGAACGTAGTGGCACCCACGTCTACCGCAGGCGTCCAGCCAGGAAAGAGCGACCCCCCTCTTGGACTGTCTTCTGGGCCCTTCCAAGCCCATCTGTGGAGTCGCCTCCCTCCTTCCCCCCACCCCCGTGTGAAGTGTGTTATCACCAGCAGACACTGCCGGACTCCTGCCCACAGGGGCGTGGCCTGAAGGGCGAGTGTGAACATGGCACTGCTGTTCCCTTCCCCCTCCCTGCACCCGCCGCAGCCTGCCATCCCATTTGGATGTATCAATGCCACTGAGTTGTCTGTCCGTCCGTGGAGCCAGTCCTAGCCACATTATTGACAGTCTTGCATTTTGTTTTGTCTCGTGATGGTGGTGGTGGTAGGGGTACGCTTAGGTGGGCAGTCCTGTGGGGAAAACATCTTGTCTCCATCTTGCTAGGAAGAACCAACCCACAAAACAACGCCATCACTGGAATCTCCCATCGCTTTAGTGAGCCATTGTCGTATGTCTAGTAAACTTTGTACTGATTCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037012:ENSMUST00000116238:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(32.5=100)
A:
NA
C2:
PF0372711=Hexokinase_2=PD(16.7=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCAGCAGCTGGGTCTAA
R:
TTAGGCGTTCGTAGGGTCTCC
Band lengths:
350-1882
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types