GgaINT1014842 @ galGal4
Intron Retention
Gene
ENSGALG00000004222 | HK1
Description
hexokinase-1 [Source:RefSeq peptide;Acc:NP_989432]
Coordinates
chr6:10474994-10478093:+
Coord C1 exon
chr6:10474994-10475156
Coord A exon
chr6:10475157-10477944
Coord C2 exon
chr6:10477945-10478093
Length
2788 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
ATGTCTTGTTTTCCACATAGAGA
3' ss Score
7.62
Exon sequences
Seq C1 exon
ATCGATAAATACCTTTACGCCATGCGGCTCTCTGATGAAACTCTGATAGACATCATGGCTCGCTTCCGGAGAGAAATGAAGAATGGCCTCTCCAGAGATTTTAACCCAACAGCGACAGTGAAAATGCTCCCTACCTTTGTGAGGTCCATTCCTGATGGCTCAG
Seq A exon
GTAAGGATCTGAGAATTTTCTCTACTGAAGATGGTGTGCTTCACGAGAAACCTGTTAGAAATGGTCCAAAGCACTACTGGGAGGAGTGAGTTGGAATTGTCTGGCAGGTGGAAGTCTTTGATAACTCTGCTGTTGTGTTCCTGCCACCTTATGCTTTTTTAGTTTCAATGCAATTTTCTGTTTAAAAAATAAAGATAGAACAAGCCCAATTCCCGCGTCTCCCTTAATTTAGCACTGCTAGACGTTATGTTGCAATGTTGTGTTGAAATTTGCAGCCTGTTGGGAAAGGCAGCCGTGAAGCTGCTGCATGCAGCCGGGTCACGGGCAGGGCTTGCTCTAAGGGACTGCAGGAGAGGTAACCACGTGCAAGTGCTGCTATAGTTTTGCAGATTGTTCCACGGTACGGACTGGAGATGTGGTGTGGCATGGGGAGCTCCTCCGGCTCCAGCATCTTTGTGGTATAAAGTGTAGATTCAGTACTGCTAGTTAAGTTTCTTTTCCTGAAATAGTCTGAGAGAAAACTGTCACTTAGCATACAGAAAGCTTTAGGTTTTGTTCCGAGCAGTTCTATCTTTTTAATGCAGAAGGATAGCTCTTACCAAATGCTACCTTGCTATGAGGCTGGCTGGAAATCAGCAGCACTGATCCGTCAGTTTGCTGCCAGGGAAGCTGTTTCTGAAGTGCAGGATTTGTTTGAAGTATGTACCGAGGTGCATTTAGGCTTGAAATAGGGCCATCTGGCCCAGTGTTGATTTTTCATTTATTTATTGAAGGTAATGGTTTACATTCAAGAAATGATACCCTGTAACGATAAAGCTTATTCAGGTATTTGGCTTAATGAGATGCTCGTGGTAAATGGTTCCTTCCAGTCTTGTCCCGATGAAGGTGAGGGACTGAATTTGTGATGCAAACCCCAGTAGGAGAACTGCATGTGGAATTTGGATGCGTTCACATTTTCAGTGACATCTTCAGTGATGCAAAGCAATATTCAATGCCTTGGTGTTCAGAAGCAGGCAGACATGCGCTGCACAGTCTGTATCTCAGCAAACTCTGAGCTTGCCCATGTCTTAGGCGGTGTGAAGAGAAGGCTGCGTTGCAGTGGAGTGCACTTCTAAGGGCTGGTAGGAGGCATGGGCTCCCATTGTCTTCTTATTGCATATTCTGTAAGCAGGCTGATGCTCTTTGTAATTTCTCATGTGGTGGTGTTTTGTGTGCTGCATTAAACCACAGTATTGTGAAACCATAAAGGCTTCTGCAGCGTATTTGCCTCTTTTGGCTGTTGGAGGGCTTTGCTGAGTGGAGCAGGGCTCCGGGGGTGTGGGGGGCGATGCGGAGGAGCTGTGAGACTTGAGGAGTTATGGACTGGTGTTGGGCAGTTATCTCAGAGGTGAGTCTGAGTCTGCTAATCCTCGTGGTACGTTGCATACCCTGTGTTTTGGCAGCACTGTGGAGTCAGAAGGCTCTGAGAGCGGAGCTGAGGTTTGAAACAACATGACACATCAATAGATATTGATCTTCCCAGCTGCTAGAGCTCTTTCCACGTAGAATATAGTTAGAAGTGGAGAAGTGATGATGTTGGGAATGGCCTTCCCATAGGCATAGAATAAAGTTGGAACAGCCTTAGGCTCAAGCCTAAAGAATGCCATGGAATGGGATTGGCAATATGGAAGGCAGCTGGGGGACGCAGCTCATCGCACCTGCAGTGCAGAGTACTTCTGGCACTGTCAAAAAGTACAAACCAATAAAAAACAAGGGTGAGAAAGCACTGCATGCTTGTTCTGCTTCCCTCTGAGCAGCCTGGGTGAGCCGGGGATGCTGTGTACACATGCAGGTGCTTGCAAATAGCCTCAGTGATTAGCTGCAGCCTGGGCACACCTGGCTGTTGGTTAAGGTGTGCTCGCTGCTTCCCCAAATGCTATCTTTTCACAGACTTCAGTGATGGCTGTCTTTGTTTGCTCTCTCTTTGATAAGACAAGATAGCAGGAGCGGTTCAGTCAGATGTATTTGCCTTGCTCTCCAGGGGGTACTGACAGTGTCATTTCCCAGATAGCTGGAACACCGTTGTGTATTTGGCTTCAGACCTCTGAAATGCTTCCCAGTGCAGAGGGGGATGGAGGCACCCTCACTTCTGCCCCGGCTCCTGGCGAGGTGTTTGGAGCTCTGTGCAAAGGCTTGCAGGTCCTGAGTAACTCCTGCGGCAGCGCAGGGCTCCGCGTGGTGTTTCAAGTTGCCGTTTCTCTGACTTCTGTTATCTCACTGCAGATTGCAGTGAATCTCCGCTTCTAGGGGTGAAACGAGTGGCTCCTGCTTAACTACATCTCCCTGTAATCTGTTGATTTCAGAGCAGAGCACAAACCAGCCACTATTTGCTGCTACTTGCCAAAGTGACACAGGCTTGCTTACAACACAAGGCGGCTCATCAGTGCTCTGGCATCCCTTCATTTCCTCTTCTTTTTCCAACATCCTTTCAGCTTTCTCCTGAGATCCTTGCTCTGCCAGCTTAGTCATGAGATCTGGATACAAACTTTCCGCTCTTGGTTCATTCTTTCTGGATGAGCCCTCAGTGCAGTTACCCATGCATCGATGGCAGCCGTCCTTGCCTTTGCACCATTTTCATCTTCAGGGGGAGGGAACTGGGCTGACACTTCGCGTGGACGCCCTATAGCTAAAGACTTGCTTGCCATAAGCACTGTGCATTTCTCCATGCATTATAAGTAATAGAGCTTACGTTTTCCCAAATGCGTGTTGCATGCAGCTTTTAATCTCCCATGTCTTGTTTTCCACATAG
Seq C2 exon
AGAAAGGAGATTTCATCGCTCTGGATCTCGGTGGTTCTTACTTTCGAATTCTGCGGGTGAAAGTATCGCATGAAAAGAAGCAGACGGTACAAATGGAAAGTGAAATTTATAATACACCTGAAGATATCATTCATGGCAGTGGGACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004222:ENSGALT00000006719:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.060
Domain overlap (PFAM):
C1:
PF0481510=Sec23_helical=PD(72.1=89.1),PF0034916=Hexokinase_1=FE(26.2=100)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(23.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]