GgaINT1014861 @ galGal4
Intron Retention
Gene
ENSGALG00000027287 | HK3
Description
hexokinase 3 (white cell) [Source:HGNC Symbol;Acc:HGNC:4925]
Coordinates
chr13:9652385-9652888:+
Coord C1 exon
chr13:9652385-9652642
Coord A exon
chr13:9652643-9652727
Coord C2 exon
chr13:9652728-9652888
Length
85 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
GCCCCCGTCCTTCCCCACAGCTT
3' ss Score
11.46
Exon sequences
Seq C1 exon
CAGCCCCGGGGGGGGGGGGGGTAGCCCCGGGTTGGCCCTACTGCAGGTGCAGGGCATCCTGTGCAACCTGGAGCTGGACGCCAGCTATGAGGACAGCGTGCTGGTGCGGGAGGTGTGCCAGGTCGTGTCCCAGCGTGCCGCGCACCTCTGTGCCGCGGGGATGGCCGCCGTGGTGGAGAAGATGCGGGAGAGCCGCGGCCTGGAGCAGCTCACCGTCACCGTGGGGGTGGACGGCACTTTGTACAAGATGCACCCGCA
Seq A exon
GTGAGTGCGCCCACCAGGCACCCGTGCCCTATGGGGGGGGTGCGGGGCAGCCCCGGTGGCACTCAGCCCCCGTCCTTCCCCACAG
Seq C2 exon
CTTCTCGCAGAACCTCCAGCAGATGCTGCGGGAATTGGCGCCCCGCTGCGATGTCACCTTCCTGCAGTCGGAGGACGGCTCGGGGAAAGGGGCCGCGCTGGTGGCGGCGGTGACGTGTCGTGAGGCCGACCCCTGCTCCCCACAATAAATCGCTTTGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027287:ENSGALT00000045865:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(34.7=100)
A:
NA
C2:
PF0372711=Hexokinase_2=PD(16.1=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGACGGCACTTTGTACAA
R:
TTTATTGTGGGGAGCAGGGGT
Band lengths:
182-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]