RnoINT0070986 @ rn6
Intron Retention
Gene
ENSRNOG00000026235 | Hk3
Description
hexokinase 3 [Source:RGD Symbol;Acc:2798]
Coordinates
chr17:10152324-10152955:+
Coord C1 exon
chr17:10152324-10152557
Coord A exon
chr17:10152558-10152638
Coord C2 exon
chr17:10152639-10152955
Length
81 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
CTCAGCCCCTTCCCTCACAGCTT
3' ss Score
8.56
Exon sequences
Seq C1 exon
TGACAGCCTGGCCCTGCGTCAGGTCCGAGCCATCCTGGAGGACCTGGGGCTGACTCTGACGTCTGATGATGCCTTGATGGTCCTAGAGGTGTGCCAGGCTGTGTCCCGCAGGGCCGCCCAACTCTGCGGGGCAGGTGTGGCTGCAGTGGTGGAAAAGATACGGGAGAACCGGGGCCTGCAGGAGCTGACAGTGTCTGTGGGAGTGGATGGGACGCTCTACAAGCTACATCCCCA
Seq A exon
GTGAGTCTGGGTAGGTGGGTTGGGGTGGGAAGCATGGCCAGGGGGGCCTGGCTGGGCTCACCTCAGCCCCTTCCCTCACAG
Seq C2 exon
CTTCTCCAGGCTGGTGTCAGTGACAGTTCGGAAGCTAGCCCCTCAGTGCACAGTCACCTTTTTGCAATCGGAGGATGGGTCTGGGAAAGGGGCAGCGTTGGTCACTGCTGTCGCTTGCCGCCTGACCCAGATGGCCTGCGTTTGAGGAAAATCTCCAAAGAGCAATTGGGATCTCCCTGGACTAAGGATTCAGCCCACACGGACCCTCTGGCGGGCCCAGCCACCCACAACTCCCAAAGAAACCCACGGGTGGTGCCCTCATAACTGTCCGCCCACACCCAATGGCTTTCTGAGAGAAGCACCACTCTGGTTAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026235:ENSRNOT00000031935:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(32.5=100)
A:
NA
C2:
PF0372711=Hexokinase_2=PD(16.7=81.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCAGTGGTGGAAAAGAT
R:
GACCCATCCTCCGATTGCAAA
Band lengths:
177-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]