BtaINT0072332 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014898 | HK3
Description
hexokinase 3 (white cell) [Source:HGNC Symbol;Acc:HGNC:4925]
Coordinates
chr7:39693214-39693857:-
Coord C1 exon
chr7:39693624-39693857
Coord A exon
chr7:39693536-39693623
Coord C2 exon
chr7:39693214-39693535
Length
88 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
TTGGCCTCTCCCCCTCACAGCTT
3' ss Score
9.4
Exon sequences
Seq C1 exon
TGATAGCCTGGCCCTGAGGCAGGTCCGAGCCATCCTGGAGGATCTGGGGCTGCCTCTGACCTCAGACGATGCTCTGATGGTCCTGGAGGTGTGCCAGGCTGTGTCCCAGAGGGCTGCCCAGCTTTGTGGGGCAGGCGTGGCTGCCGTGGTGGAGAAGATTCGTGAGAACCGGGGCCTGGAAGAGCTGACCATATCCGTGGGGGTGGATGGGACCCTCTACAAGCTGCACCCTCA
Seq A exon
GTGAGTCTGGGTGGTGGGCTGGGCACGGGAGCCACGGCCAAGTGGGACTGGACTGACCTAGGCTCACGTTGGCCTCTCCCCCTCACAG
Seq C2 exon
CTTCTCCAGCCTGGTGGCAGCCACGGTGCGGGAGCTGGCCCCTCGCTGTGTGGTCACCTTCCTGCAGTCAGAGGATGGGTCTGGCAAAGGTGCAGCCCTGGTCACTGCTGTTGCCTGCCGCCTTGCCCAGAGGACCCGTATCTGAAGAAGTCTCCAGCAACCAGCTCTGTTGGTCCAGGGCTGGGACCCTGTCTGTCCCCAAGCCAGGCCCAGACACCCAGGACTTTCCGGAATAGTCATGTGTGACCCCTGCTGGGGAGACCCTTAGCTTTCCCCGAGAGAAGTAGCACTTGGGTTAGCAATATATATATATAATTTATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014898:ENSBTAT00000019834:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(32.5=100)
A:
NA
C2:
PF0372711=Hexokinase_2=PD(16.7=81.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGGTGGAGAAGATTCGTG
R:
TTTGCCAGACCCATCCTCTGA
Band lengths:
179-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]