GgaINT1014862 @ galGal4
Intron Retention
Gene
ENSGALG00000027287 | HK3
Description
hexokinase 3 (white cell) [Source:HGNC Symbol;Acc:HGNC:4925]
Coordinates
chr13:9648574-9649133:+
Coord C1 exon
chr13:9648574-9648736
Coord A exon
chr13:9648737-9648984
Coord C2 exon
chr13:9648985-9649133
Length
248 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
CTGTCTGTGCTCCTCTGTAGAGA
3' ss Score
9.31
Exon sequences
Seq C1 exon
GTGCAGCGGGCGCTGCTGGCGCTCACCCCGACGCTGGAGAAGCTGCAGGAGGTGAAGGGCCGCGTGCTGGAGGCCCTGGAGCGGGGGCTGAGCCAGCAGAGCCGCGCGCGTTCCACCATGCAGATGCTGCCCACCTTCATCTGCTCCACGCCCGACGGCACCG
Seq A exon
GTGAGACGGCTCTGCTGGGTGCGGTGCCGGGGATGGGTGCAACGGAAACGTGATCTCACGGGGCCGCGAGCCGCTCCCGTGCGGCTGCGATCCCGGGATCCCCGGATCCCCTCCCTCTGTCCCCGCGGTGGTCCCCGCTGGGAACTGCTGCCTCACTACGAGCGGGCGTCACCGGGACGGGGCAGGGGGCGGCCGTGGTGCTGGGAGCCGGGGTCGGCCTGATCCTGCCTGTCTGTGCTCCTCTGTAG
Seq C2 exon
AGAACGGCGACGTGCTGGTGGCGGAGCTGTGCCAGAACCACGTCCGCACCCTCTGGGTTACCCTCGCGGGCGACGGAAACCAGAACCCACAGCTGATGTACCGCGTCTTTGAGACGCCGGGGGACGTCCTGCAGGGCTCCGGGGAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027287:ENSGALT00000045865:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(26.3=100)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(23.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCGACGCTGGAGAAG
R:
GAGCCCTGCAGGACGTCC
Band lengths:
278-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]