HsaINT0076399 @ hg19
Intron Retention
Gene
ENSG00000160883 | HK3
Description
hexokinase 3 (white cell) [Source:HGNC Symbol;Acc:4925]
Coordinates
chr5:176318038-176318551:-
Coord C1 exon
chr5:176318389-176318551
Coord A exon
chr5:176318193-176318388
Coord C2 exon
chr5:176318038-176318192
Length
196 bp
Sequences
Splice sites
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
3' ss Seq
GTGACCTGCTTGCCCTCCAGAGC
3' ss Score
8.87
Exon sequences
Seq C1 exon
GTGCAGGAGTGCCTGCAGCAGTTCAAGGTGACAAGGGCACAGCTACAGCAGATCCAAGCCAGCCTCTTGGGTTCCATGGAGCAGGCGCTGAGGGGACAGGCCAGCCCTGCCCCTGCGGTCCGGATGCTGCCTACATACGTGGGGTCCACCCCACATGGCACTG
Seq A exon
GTGGGTATCATAGATTGAGATGCGTGGCCAGGCCTGGAAGAGGGTACTGATCTAGGGGAGGGAAACGTTCCTTATTCCTGTCCCCCATCTCTATGGCCCCTTGACCAGACTTTGCAGGCCTTAGGAATTTGGGAAGTGGGCAGAGGGCTCTGGTCTTGCCAGCTGCATGGCTTTCTGTGACCTGCTTGCCCTCCAG
Seq C2 exon
AGCAAGGAGACTTCGTGGTGCTGGAGCTGGGGGCCACAGGGGCCTCACTGCGTGTTTTGTGGGTGACTCTAACTGGCATTGAGGGGCATAGGGTGGAGCCCAGAAGCCAGGAGTTTGTGATCCCCCAAGAGGTGATGCTGGGTGCTGGCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160883-HK3:NM_002115:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.177 A=NA C2=0.007
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=PU(76.9=98.0)
A:
NA
C2:
PF0034916=Hexokinase_1=PD(21.5=24.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTACAGCAGATCCAAGCC
R:
CACAAACTCCTGGCTTCTGGG
Band lengths:
243-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)