BtaINT0072334 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014898 | HK3
Description
hexokinase 3 (white cell) [Source:HGNC Symbol;Acc:HGNC:4925]
Coordinates
chr7:39704846-39705376:-
Coord C1 exon
chr7:39705214-39705376
Coord A exon
chr7:39705001-39705213
Coord C2 exon
chr7:39704846-39705000
Length
213 bp
Sequences
Splice sites
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
3' ss Seq
TGTGACCTGCTTGCCCACAGAGA
3' ss Score
9.64
Exon sequences
Seq C1 exon
GTACAGGAGTGCCTACAGCAGTTCAAGGTGACAGGGGCGCAGCTGCGACAGATTCAAACCAGCCTCCTGGGCTCCATGGAGCAGGCACTGAGGGGGCAAGTAGGCCCTGCCCCTGCTGTCCGGATGCTGCCCACATATGTGGGGTCTACCCCACATGGCACTG
Seq A exon
GTGGGTGGCACAGACTAAGATGGGTGGCCAGGACTGCAGAGAGGGTTCTGATCTGGGAGAGAGGTGGGTGGAGGGAGGTGGGGTGTTTTCCTTACCCCTTGCTCCATCTCTAAGGTCCCTTGATGAGCCTACACAGGCCTTAGGAATGTTTCTGGGAGGTGGAGGGCTTGGTCTCACCAGCTGCATGCCTTTCTGTGACCTGCTTGCCCACAG
Seq C2 exon
AGAAAGGGGACTTCGTGGTGCTGGAGCTGGGGGCCACAGGCGCCTCACTGCGTGTTCTATGGGTGACCCTAACGGGCATCGAGGGGCACAAGGTGGAGCCCCGGAGCCAGGAGTTTGTGATCCCCCAGGAAGTGATGCTGGGTCCTGGTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014898:ENSBTAT00000019834:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.127 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(26.0=100)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(24.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGTTCAAGGTGACAGGG
R:
AGGACCCAGCATCACTTCCTG
Band lengths:
294-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]