RnoINT0070988 @ rn6
Intron Retention
Gene
ENSRNOG00000026235 | Hk3
Description
hexokinase 3 [Source:RGD Symbol;Acc:2798]
Coordinates
chr17:10143941-10144452:+
Coord C1 exon
chr17:10143941-10144103
Coord A exon
chr17:10144104-10144297
Coord C2 exon
chr17:10144298-10144452
Length
194 bp
Sequences
Splice sites
5' ss Seq
CCGGTGGGT
5' ss Score
7.85
3' ss Seq
ATGACCTGTTTGCTATGTAGAGC
3' ss Score
6.7
Exon sequences
Seq C1 exon
GCACAGGAATACTTGCAACAATTCAAGGTGACCATGACACAGCTGCAGCAGATCCAAGCCAGTCTTCTGTGTTCCATGGAGCAGGCGCTGAAGGGACAGGACAGTCCCGCTCCTTCTGTCCGGATGTTGCCCACATACGTGAGGTCCACACCACATGGCACCG
Seq A exon
GTGGGTAGCACAGACTCGGGTGGGAGGCCAGACATGGAGAATGTGCTCTGACTGGGGTGAAGAGGAAGGTTCCTTATCTCTGTCCACCGTCTCCGAGGCCCCTTTAACGGGGCTTCTCAGACTTTGGAAGCTTTTCTGGGAGGCAGGTAGGCCTTGTCAACTGTCTGTCTTTCTATGACCTGTTTGCTATGTAG
Seq C2 exon
AGCAAGGAGACTTCCTGGTGCTGGAGCTGGGGGCCACAGGAGCCTCACTACGTGTGTTGTGGGTAACACTGACGGGCACCAAGGAACACAGCGTGGAGACCAGGAGCCAGGAGTTTGTGATCCCTCAAGAGGTGATCCTAGGTGCTGGCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026235:ENSRNOT00000031935:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.191 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(26.1=100)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(24.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACACAGCTGCAGCAGATC
R:
AGGGATCACAAACTCCTGGCT
Band lengths:
255-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]