GgaINT1015158 @ galGal4
Intron Retention
Gene
ENSGALG00000022565 | IDH2
Description
isocitrate dehydrogenase [Source:RefSeq peptide;Acc:NP_001026770]
Coordinates
chr10:19520285-19520570:-
Coord C1 exon
chr10:19520458-19520570
Coord A exon
chr10:19520383-19520457
Coord C2 exon
chr10:19520285-19520382
Length
75 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
GGGGGGCTGTCTGCCCGCAGGGA
3' ss Score
9.45
Exon sequences
Seq C1 exon
GCTTCGGCTCGCTGGGGCTGATGACCTCGGTGCTGGTGTGCCCCGACGGGAAGACCATTGAGGCGGAGGCGGCACACGGCACCGTCACACGGCACTACCGGGAGCACCAGAAG
Seq A exon
GTGGGCTGTGCCCTGAGGGGTCCCTGAGTGAGGGGTCCCGGGGAGACCGCTGAGTGGGGGGCTGTCTGCCCGCAG
Seq C2 exon
GGACGGCCCACCAGCACCAACCCCATCGCCAGCATCTTCGCCTGGACGCGCGGGCTGGAGCACCGGGGCAAGCTGGACAGCAACCCAGAGCTGATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022565:ENSGALT00000036142:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.237 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0018015=Iso_dh=FE(9.3=100)
A:
NA
C2:
PF0018015=Iso_dh=FE(8.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACGGGAAGACCATTGAG
R:
GATCAGCTCTGGGTTGCTGTC
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]