GgaINT1015734 @ galGal4
Intron Retention
Gene
ENSGALG00000010214 | JADE1
Description
jade family PHD finger 1 [Source:HGNC Symbol;Acc:HGNC:30027]
Coordinates
chr4:34002114-34005331:+
Coord C1 exon
chr4:34002114-34002237
Coord A exon
chr4:34002238-34005253
Coord C2 exon
chr4:34005254-34005331
Length
3016 bp
Sequences
Splice sites
5' ss Seq
GTGGTTAGC
5' ss Score
0.58
3' ss Seq
GCTGTCTGGTTGCTTTGCAGGCT
3' ss Score
9.08
Exon sequences
Seq C1 exon
ATGGTTTTCTTTCTCGAAAGTGACATAATTGCCAGTATCCTCTCGGTGTGCAAACTGCGCATGCACGTGGCTGAACAGGGGAAGCCCGCACCGTCAGACTGCACCTCACCGCCAGCTGTCTGTG
Seq A exon
GTTAGCCTTGCTGCTGTCCTTGTGTGGCTGCGAGGTCCCTGTTGGCTGGCAGAAGCCAGTGGTGCTCAGGACGGAGGGACTGTGTGTGGTACTACAGGAGAAGCGGCATTTCCATGGGTGTGGGCTGTTCTTGTGAGCTGTCCCAGCGCTACCTGTAGAGGGTGTATTCTGGGCTGTGGGCCTGAGCGTCTGGTGCATGATGTTCAAAAGGAACAGGCTGAAGTTATTTTAGAAGTCAAAAACTGCTTTATTCCTTTTAATGACAGAACATTTGGGGCTTAATCTTAGGGGGTTTGTCAATTGCTTAGGGCAGCCAAGTGCTGCTTTTCCATCAGCAATGTAGCTCCCCGAAAGCTCAGTGAAGTTCAAAGGTGGGAAAGGAAGATCTATGGATTTCAACTCTCCTTTCGTATGCATCTGTAAAAGAATTTCACACAAACTTCATTGCACTGTGCATTTCCTTTTAATGTTATATTTGAGAATATAGGCTTTTCAATACAGTCATCTTTAGAAACCTGCCTTAGAGTGGACAGGTAAATGAACTGCCCCATTGAACGCTCTGTACTGCAGAGAAGTGGCTGCTGTGCTGGCTCCTGACTAATGGAGAATAGCTGGATAATCCTGAGAGCTTGATGGAGGGGTGTGGGTACCATTCTCTCCTTTAAACAGCAGTCGGGGGGGAAGAAGCAGTAGCATTTGCTGTATTTTGTATTTTTTAAAAGATACTCAGTAGAAGGGAAAAGCTTCTGGACATTGCTTACTTCATGAGTTTGCAAAGTATGGTTAGGAGAAGATGAACACAGAATATACTTGTCTGAAGAGATGCAGGGGGCATCCCAAGGCTCTGAGTGTTTCCTCTGTGTGTATGCGCAATGTTATTTTGCTTTAGATTGCTTACTTTTCAGACCGTGCTGAAATGAAACAAGAAGTGAGGATTTTGACCCGGAATGCACAAGTTGCATTTATGAGAGAGTCTAGATTTTTTTTTTTTTTTTACTTTATTCCATATCCCTTTTATTTGGTTTATAGGAGGTATTTCCACACTAGCTGAGCATGCTCATTTAGTTTGGTACTGTTCATAGTTGTTTCAGTTACAAGACAAGCACGTGTACTGTTAGCAGAAGTGTCCTAAGGAATTGGGTTCTGGGCTAATAGCAATGAGTTCTATCTTAGCCCGGCTTGGATCTGAGTGTTGCTTTCCAGTATTTCATAAGTGACCGTATGAGTATTTGGCTCTGGAATAGTCCATTTATACCAGATCCCTTCAGAGGACTGTGATGTCCTGCGCCGGTGTGTGTGTTTTTTCATTAGTGACCTTTCTGCTTGTCGTACACAGAAAATTCTGGTCTGCTCCAAAGCCATTCTTCTGGGCTGAGTCCTTTACACGCTGTAAGAGGCTGTCATTAATGATTCTTCATTCTCTGCCATCAGAAGTTATATGTGAACTTTTACACGGTGGTGACAACAGGTCTTGGTGAAATATTCACCAACTGTTCAGTTTAATGTAGTATAATATCAAAAAGGAGGAAATCTCGCAGTGCTGGGGCTCTAAAAACAAATTGGAATTTACTGTACGTGTAAAATAGGCTCAGATTCAGTTGCTTATGCTTTCCTGGAGGTGATCAAATGAATTCTGTCTCAAAAATGCGTATTTCTGTGTGAATCCATTTGTGAAGAGGATATTAATTTCTGTTTTCTGGGGGAAGTTGGAAGTAGTGGCAGGCTTTGATGAGGCTTTTCTTCTCCTCACTTTGAGAATTACTCTTAAAAGTTGAAAGGGTTCTCCTGGAGTTTACTACCGTGAGTCATTTCTCACTGAACAAAGCAGAAGTAGTTACCAACCTCCTGAAGTGGTCAATGAAAAAAGCTTTGCTGAGAGGTTTCTGGGAAATTCCAGCTCACATGGAGATTAAGAGGCTGAGTTTTCTGCACCCACCTAGAAGCCGAAGTGTTTCAGCATCTGATTTTCAAGCCCGCGCCCTGAAGGCATGTACCAGGGCTTTGCTGCCAGCAGAACACTCAGACCTTGTTGATAGCACAATTGATACGTGGCACACAAAGGCTCAGGGGATTTGATGTGCTATCTAGAGCCCTTGTCAGTTCAACTTAAAGTGGATATGCCTTTCCTCGCTTCTTGTCATGTTTTTTTCTGCTTTTCAACTTACTCCTTTTAATAAGTTTATACATGTAATGCTGACTGGCTATTCACAGCTTCCTTTCTTTTTTTTTTCTGAATTTACTTCCATTCTGCAATGAATACACGCAGAATACCAGTACCGTGTGAGTAGCCAATAAAAGCATAAGGAACGTTTGCCTTTCCATCAGCGGTTCGTGTGCAGTTGAGCTCAGTATTACTAGAATTCACCAACTTTGGAGCTTGGAGGGGCTGTGCAATCAGATGTTGGTGTGATTCCTGCCGAGCAGTTAGTGTTTGTGCAAGCTGGTAGACGTGTCTGCAGGAAGAAGTGACTCTGACCTTAGAGGTGGTACCTTCTGGAGCATATATGATCCATGTGTAGTTAAGCTGGGAAAACTTGGCTTGCTGCTGCTGATGTTTCTTATTTTTTATGCAAGGGGAAGACTTTAATCTTTGACTTCGCAAATCTAGCACTTAACACAGGAATAAAATTGTTCCAAAGGCATATCAGGCAAAGTAAATATTTACTGAGGCGGTTAAAATGTTACTGTATTGCAAAGCTAGTGTCAGAATGGGTAGTGCGAGTTAAATTCATTTACTGCAGATGCTTAGTGGTGTTCAACCTCAGAAACAAATATGCTTCTGTTTTGGGGTGGAAGTGTCGGTGGGCTTGTCGTTACACCCTCCAGTTTTTTCCACCTGCTCAGAGGGTAATTACCTAATTAAGCACCTTTGAGATATTCGTTGCTCATATTTCAGATGCTGTTTAAAGTTGTTTGTTTTCCTTTACGCGTTGCAAATCCTCAGATGCCATCAGAAACACAACCTGATGACTGCGTATTATAATCTCGAGTTAAGTGCTGTCTGGTTGCTTTGCAG
Seq C2 exon
GCTGCCTGCTGTTTCCCGGGGAGATCATGAAACGACGTCGGCTTCCTAGCAGCAGTGAGAATTCTGACGACAATGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010214:ENSGALT00000016607:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]