GgaINT1016159 @ galGal4
Intron Retention
Gene
ENSGALG00000009283 | KIAA1715
Description
KIAA1715 [Source:HGNC Symbol;Acc:HGNC:21610]
Coordinates
chr7:15868345-15872637:+
Coord C1 exon
chr7:15868345-15869031
Coord A exon
chr7:15869032-15872555
Coord C2 exon
chr7:15872556-15872637
Length
3524 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
GCTTAATGCTTTACTTCTAGCTG
3' ss Score
5.95
Exon sequences
Seq C1 exon
AAAGGAATTAATTTCCTAACGTCAAAACTGAGAATGGATGGCTGGCAGATGACCAGGCGCAGCAGCTCCACTACTTAAGTAGCAAAGCTGAAAAGTAACCGGCACATCTTGTTTGTCTTTCCCCAACCTTGTTTATTTCCCATAACAGTTAAGACTGATGCACTGCACTTGGCTGGGATGGAGTTAGCTTTTGTCCCAGCAGCCCCCATATTGCCGTGTTTGGGGATTTTTTTTGGCTACAAAAGCATTGATAGCACGGGAAAACACCACGGGCCGAGCTATGCTGCACGGTTAGATGGCAGGAGTCAGTTAGACTGCAGGAGTCAGCTGAACGTGCGCGGCTCATGCATACGAATTTCCACCCCGAAGGAACTACCACCTTGCTTTCGCAGCTCTGCACAGCCGCAGCCGTGAAACGTCTAAGCGGGGGAGCTGAGGAGTCGCGACTGCACGCACAGCAGCGCTCTGCGCTCCTCCGTCTCCTCCGCACGGGCTGCGCCAGCCCAGAAAGCGCAGAACGAAACCTCCACACGGTGCCCGCTCCCCTCCCCCGCCTCAGCGCGCCCCGCGGCGGCGCGACGCTGATTGGCTGCCGGGACCGCGCGGGGGCTGATGGGATTGCCGCCGGGGCGGCCCGGCCCCTCCTTCGGCGGGCGGCGGCGGGATGCGTGGCCCGGCGCGCGGCAG
Seq A exon
GTACGTGTGGAGCGCCCGGCCCGGCTCCGCGGCGGGGACTCGCTCGCCTGTGGGGCGGATAGGGCGCCCGGCGCTTTCCGCGGGCCGGGACTGGAGCCGCCGGCACGGCCCCCGCCTTCCTTTCGCTCGTTGACAGCCAGCGGCCCCTGGGGAGCGCGGCGGCGCAGGCTCGGAAGAGGAACCGCGGGCGGGAGGAGCACGCGGGGCTTCCCCCTGGCAGCGGGCGGGGGCCGGGATGGAGCCGCCGCCCAGTCCGCGCTGTCCGGCCCCGGGCTCGCTATGGGGCGCGGAGGGCTCCTGGGCCGCTGCCCCGTGCTCCGTGTCCTTCTGGCGAATCGCGCTTCTTTGTAGTTCAGGAGAAGCGCGGCGCGTTGAGGTGCTTCCAAGCAGATGGCAACGAAGCTTGTAACGAACAGAAGTCAGTGTCTACCTCTAACAGAGGTAACAGGGCAGGGAGCAGTGCGTGGCAGGTGATGCTCACGGTTTACGTTCACCTGTCTGAGGCGTTCGGAGCTTCTTCAGCTTGTTGTGGGTGTCTGAGGCCGGCGAGCTGTGCGGGAGCCTGGGCTGTGGGTGGAAACGCAGCGAGCAGACCCGGACACGCAGTTTGGAGGTGGCACTTCCATCCTGGGTGTGATGGTGAGCGCCTGATGAAGTCTATGCAGGAACAAATTAGTAGGCTTGTAGAATACCTGATTGAAATGGCACTCCCCTTCCCTTGGGGGTGCAGTGTCTGTGTGTCTGTATGTAAAGTCCCGACTGCAACTTCCCCAGCCTTCTTTCCTTTCGGTATGACTTGGTTTGATGTTATTTAGTCATGATTTTCAGTGTGTTAGTTCTTAACTTCAGGGATTTTAATTTCTGGAGAGCTTTTTAATCATGGAACTTCTTTGAAGTTAGCTTGAAGAAATTTGAAAGCGGTCATGATGTTCTGTATGCTTTTGGGCCCCTTCTAAAGGGAGCCCTGAGGGTACCTGGTGTTGTTTGGACCCAGTGTTAGCTCTGAAATGGAGTGCTGCCTGTGCTGTGAGCTATGGGAGGCAGTCCACCTGACTGTGTAACTTGGTGAGGTGTAGTGAGATCATCAAACCATTTTCTCCTTCTGGATGAGTAGATTGGAGGGTGTAATTGTGCATGCTCCATCCTCTTTCAAAAGAAAAGCCTTTTCTGCTTCAGCTGTCCTTCTGTGCCATGTCTGCTTTTTCCTGATGAAGTTGCTTGTTTTTTTGGGTAGAGGAGATGCTACCAGTAAACGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACTAAGGCAAATAGAAATCAGTAATTGTGTTTTCATGACCTTCTGTGTTGTTTTCACAATTCTTGTGTTGTTGATCTTTTTTTTTAAAGCCTAGGGTTCAGCTATGTTGTTTGCACATTAAATCAGTGTTAATATGTGTGGAATTGAGGCCTATCACAGCAGTGCGTGGTGAGTGAATAGAACAGCTCTATGCTGAAGAAGTGCCTTCTTCTGAAGGAGAAGAAGGAAGGAAAGTGCCTGGAGTGATCCATAGTAAACACCGAAAATTCTCCATCTGGTAATGGAGGATTAAGTGACTAAATTGTAAATGTGAATTCAGTGGCCCTAATCCTCTTTGGAGAAGGGATATGGTAATACTGACTCACAGGCAGTATCCATAAAGCCTGTCACTCTCATGGTTCCTATAAAATTATGCATGTGAGGACACTTGTCAAACCTGTTTCCCTTCCAGATGTTTGCCAGATAGTTTGAAAGACATATGGATAGATAACACTGTGAATGTGTTGTTGACAGAGGTCTGCAACGCCAGTGGGTCATGAATAATCTTTGCTCACAGGGCCCTCTAAATGCTCTGTGTCAGAGGTTCTGCAGCTGTGGTATGAAGGAAGATGGCTCCAAAAGGCCATATGAACCTAAAAAAGCTACCTGTGCTCGTAGCACCAGTGGCAGTATAATTGAAGCAAACTGGATTTGGGAACCACGTGCTAGGTTTACAAGCTTCTTAATTGGCTAGCCAGCAGCATTCGTTCTGTTTTGCAATAATGACACTGTTTCAGTGTGGAAGTACTTGAGGAGTAAGTGTCGTCCCACATCTACTCGGTGCGTGTCAGAATCTGTCTATGCGTACCTGATAAAATGAGAACGGTGTAAAATTCCTAGTGTTAAAGAACAGTAGTGTTGAATGTTGAAAAGTGGAGAAGTTGCTGTTGTTTGACTGAGGTGAGTTGCTGTAATAGTGATTGTTTGGAGGATTTATGCAGAAGACCAAGGGGTAACAGTGCTTTTTCCGTAGCTCACCCGCTCTGTGCTTGTAATTTGGCAACAGCAGAGCTCATGTGTCCATCTGTTCTAGCTTCATTTTGGCTGCGTTTCAAATACAGATTTGCTTATCTTCAAGGATGGATTTTCAAAATCATAGGGCCTACAGTTCTGGGTTCTGAAGTCCTTGGCTCTCTTACAAGGTGAAGAGGAGGCTGTAATACAGTAGCATTAGTGAGCAGTACGTATCCTATGTTGTATTAATTCATTCTGACAGCCTCAGACAGTTTGGGAACAATTTCGAATGGAGATGAGATTTCTTTATCTTTCAGTGCTTGGCCAAAAGTAACTTAATAAGCAAACTAATAATCACGTACTTCTGCCTAGCTGGGCAGTGCTTTGTTTTTGCTTTGTTCTATTGTTTCACTCCAGACCGGATTGAAATTCTGTCATTCTAAGGTTCCTAGTCCATTTATTCCACCTATTTACTGATGGAAGGTTGCAACGCTTCTGTTTCAGGAACCTAGAACCAGCTTATTACATTAGTGCTGTTCATGGGTTCTGGATTTGTGTAGGCTGAACTACTTTTGCACACCTGGAATTGCTTTTAGGGCCATTTAATGTGCTGGTGACTGCCCTGAGTTGTATTCAGGGAGCACCTGCCAGTGTAGTGCTTTCCAAGAGCGTGTGAAATCTCTGTAGCCTCCTTTGAACCTAAAACCGATCATACAAAGGAGGGGTAATAATGCTATATGAGAAGTTCTTGTTGATGAGTGTGAAAAGGAAGGAAGTCTATGGAAGAAAACCTCTTTCTCGGGAATAGTAGGATGTTAATTGTGAATGTTGGGAGTGTCAACTAAATAAAAAGGAACGTGAAGAGTTGAGCTTTTGAGCAGCTGAGGAATTATTTGGAATTCAGTTTCATAAATTATCCTGCTCAGTAATAAGTTCTACAACTTTCTTGGGGTGGCTGGAGGATTTTGGCTTGTTCGTGGTTATTTTGCGTCTATTTTTGAGGGTCCCTCTCTGTTTAAACACTTAAAAAGTATAAATAAAGTTGTTCACATTCAGGTTGATAAACAGACCTACAGGATGGCCTATGAAGCAGAGACTCGGTATTACAGTAACATATGGGTAGATAACTATGCAGTGATCTTATGGCCTACATCGACATGTTTAGATATTAGAATATGTTATTACTCTTGTAGAATGCTGTTAGATTGGTCTTATGTGCTTAATGCTTTACTTCTAG
Seq C2 exon
CTGTGAATTCTTGTAGAAGATTAATAGCTCTACCTACATTTGTCCACTGTAGAAGATGGGTGGATTAATTTCAAGATGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009283:ENSGALT00000015103:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]