GgaINT1017723 @ galGal4
Intron Retention
Gene
ENSGALG00000014699 | MEGF10
Description
multiple EGF-like-domains 10 [Source:HGNC Symbol;Acc:HGNC:29634]
Coordinates
chrZ:56259331-56260975:+
Coord C1 exon
chrZ:56259331-56259459
Coord A exon
chrZ:56259460-56260846
Coord C2 exon
chrZ:56260847-56260975
Length
1387 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
TCCCCCTCCTGGTATTGCAGGAT
3' ss Score
8.51
Exon sequences
Seq C1 exon
CATGCCCACCTTCTCACTGGGGACCAAACTGCATCCACACATGCAACTGCCATAATGGAGCTTACTGCAGTGCCTACGATGGAGAGTGCAAATGTACCCCAGGATGGACTGGCCTTTACTGTACGCAAC
Seq A exon
GTAAGTGATCCTAATTGTCTGTTCACAGTCTTACAGGTCTACAAATCAGTGGCAGAATTTTCCTTCAGTGCTTTCACACTTTATTCCTCAGTTTATCCACCTGCTGCTGAACCTTTCTGATCCAGAAATGCAAGACATAATCTCTGTGGTTTCAGGGGAAGCCCCTGTAAAACCACTGGCAGAGTGCCATTGCATTTGGGCTCCCTTTAAAGCCTTCTTCAGAGGAAACAATATTTGGCCACAGGTAGATATCCCAGTGGAAGAGTCTGTCATGTGCACAGGCAGAATGAATGGCTGACATTCAGGTGCTACCACTGCATATGCATGGTTATGGCTGCAGACCATAGCATGGTTGGTGTTAGCTATACAGGTGTTCCTCATCAGGCAGGGAGATGGTGCCAGGTTAACCATTTCCCTCTCCATAACCTCTGTAGTAAATATTTTAACTGTGGAGACCCAACAGTTAACATAATAACATAGCACAATTGCTGTCGGAAGCCATGAGAGTAGCTTCTGGCTTATCTGTGGCTGTGATAGATGTCTTTGCCAATTCCAATTACAAGAAGTGCAGTCACTGAGTCTAGGTGAGTGGCACAGACTATCTGCTTGATAACATTTCGTATGACATTTGAGAGGGAAACATTAGATATCAATAAAGTCATCTTCTTAATCATTAATAGTTATATTTGTGACTTCAGTCTGATTTATCTTCAATATAGGCACCCCTACTTTCTGCAATCTGGGCAAAACCATTATTTTTAAACTAAGGTCTGTTTTCCATTCAGTGTCTAAATGCATGTTTTTCATTAAATCAGAACTTACCATTTTCCGCAGAATAATTTCATAGTGGCAGAAATAACACATGCATTATAGTGCCATATGGATGCAGCTCTGGAAGACATTCAGTTTTGGTTCAATTGTCAGCTGTCGTGGTTATTTTGCTTCCTGCTGGTGAATAATGATCTCTTTGCAGTGATACATCTTTGTCACATTGAAATGATATCTTTGTGAGGAGCTGTGTTACAACATGTTATTATTTTTAGTCTTGTATCCTTCAACATCAGCTGTGAACACTGGATAACATGTCCAAAGGTTCATTCATTACTAAATGGACTCCCTGCTGTGGTTCACAAAGTGCCCTCTTTCTCCTTAAAGCATGAGGTCCTTCTTGCTACCTTTCTCTGATTGATACCTATTTTCACAATTTGCAATCTCATTTTTATGTACTTGCTGCCCAATGAGTATTTTAAATCCCTTGAAGCAGGGTAGGTCTTCATCTGTTGTGTTTATAGAAATGACTTTTCAGTAACACAGTTAATCAGAATATGTGAATTTTATTTCTGGAGCGCTTGTCACTCCTTTTTCTCTCCCCCTCCTGGTATTGCAG
Seq C2 exon
GATGTCCCCTTGGATTTTATGGGAAGGACTGTGCACTGATATGCCAATGCAGGAATGGAGCCGATTGTGACCACATCAGTGGGCAGTGTACCTGCCGCACAGGATTCATGGGGAAGCACTGTGAGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014699:ENSGALT00000023694:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005319=Laminin_EGF=PU(63.0=65.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCCCACCTTCTCACTGG
R:
CTCACAGTGCTTCCCCATGAA
Band lengths:
254-1641
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]