HsaINT0101775 @ hg19
Intron Retention
Gene
ENSG00000145794 | MEGF10
Description
multiple EGF-like-domains 10 [Source:HGNC Symbol;Acc:29634]
Coordinates
chr5:126774131-126776559:+
Coord C1 exon
chr5:126774131-126774259
Coord A exon
chr5:126774260-126776430
Coord C2 exon
chr5:126776431-126776559
Length
2171 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
TGTCCTCCCTCCTCCCACAGGAT
3' ss Score
14.05
Exon sequences
Seq C1 exon
CATGTCCACCTGCCCACTGGGGCCCAAACTGCATCCACACGTGCAACTGCCATAATGGAGCTTTCTGCAGCGCCTACGATGGGGAATGTAAATGCACTCCTGGCTGGACAGGGCTCTACTGCACTCAGA
Seq A exon
GTAAGTGACAAGCCTTCTGAGGCTCACCAAGGGGAGCCTTGTCCAAGGAGGAAACAGCCTTACCCTCCGCATGCGTGACTGGAGCTCAACAAAGGTCCCTGAGGTTGGAGTACTTCCCTCTCCTAATGACCTGTAGACATATAAATTTCTCTAAGTGATTAAGAGCTACTTCATTCCAAGTATTCTGTCTCTAGGTTCTATCTCCACTGAGGTAGAGCAATGCTGTGTGATGGTATGCAGTTTATTTCTCTTCTCTCCTTTAACCAAATCATATTTATATGGATCAAATTCTCAATCCTTTAACAGCACAAAAGTTAGGATAAGTATAGAGATTAGAAAGGTAGAGAAGACAACAAGCCTCACTGCCTGATTTAATGTGCGCTCTTGGAAAAGGTGGAGTTCCGTGTTTTTCGAATGGTAGCAAGCTTCAGAATCACCTGGAGGACACAACAAACACAGAAGCTAGTTCCATCCCCAGAAAGCCGGAAGCAGCGAGTCTGGGCTGGCACCTGAGAATTGCCATTTTTATCAACTGGTAGTAATGCCAGGCTGGGACCATGCTTTGAGAGCCACTGCCCTAGTTCTTTTCCCCATTTTGTAATTCATAGCATCCTAACCATTTTTTCTTCCATTAGGCTTTTAGCATGATAGGATATAGTGTGCAAAGTACTTACTCCAAAGCTGAGCATCATTGGGGAAGGAAGATCATTCTCTGACCTCTTACCTTCGGTTGAATAAAGGAGACAAGAAAGGAAGGCATGTGTTATGGTTAAGTACTAATAATAGCGTATATTTTAAAATAATAGCAAGAAGCTGAGGAGGACAGATGGGTCTGAAATTGAGCAATTCTTATTTAATACTAATTAGAGTACATAATTAAAGAATAGGCTGAAAAAGTCTTAGAAACTTTCTAGAAGATAATGTAGACCTTGAACCAAGAGTTGAAAAGGATAATTGGCAAGGAAGGTAGCTGGCCCAAGCATATTCTTCAGAGTTCGTATATCTATAAATATTGTTTAACTTCTTAGAGAAAGGTACTTGTAAGATATTATTTATAATTCTAAAATTAGAACGTGCTTCAAAGAGAGAACCCTTTTTCAAGTGCAAGTAACATGATATAGTGGGAACAACATGGGGTCCAGAGCCAGACCTCCCTGTGTTTGAATCATGGCCCTGCCGTCCTGCCAGTTGCCAGCTGTGTGACTTAGGGTACTTGGGGCTTAGTTCCTGTCTACAAGACGGGAATATCCATCCCTGCATTTCTGGCCTGCTGTAAAGATTAAACAAGAGAACGCATGAAAAGAATCTGGCACAGAGTAGGTGCTAAATAAATGCATGACAGCAGGGAGTCATCGGTGCATACTGGCATCTGGGCACTGCCTCTGCTTCTTGAAAGTTCCATAAGAAAATGAGAAAATGAAAAGCATATGTAATATTTGGAAACAATCATTGAATCAGCCTGCATTGAATCTTTCATCACGCCAGAGATCCCCAAGACACTCTTGCAGGGCAGCTGCCAGCCCATGTAAGCCAACAGAATTTGTGGGTGTCTTTAGCTCAAGAGACTCGCCGGTCTAAGCATTGAAAATCATGCAGCAGTGTGAAGGGTTATTGCTTTTTACAAAGCACCTGTGAAGTACAATTGTTTTTTAAGGTAAGCATTCTAGTACACCTCTTCAGGGAAGTTGATATTATCTAAGATAATAACAGATACAGTGGACAAGGCTAGTAGCAACAATAGAGATGTTCTGTACTACAAGTAAAAGCATACAGGTAATTTTAATATAAAGTACCCGTCTCAGTCCATTGGAATTTGAGTCCAGGATTCTAGTAGAAATGTGAAAGAATGAAAGGAAATGTCCTATTCTTCCAGGATTGAAGGGATATTTTGTTAGAAGGCACTAGTCTTGCCTCCAGGGGTACCAGTGATGGTTACACTGACAGGAATGGAACTCTTCTGCCTCCTGCTTATGAATTACAACCTCCTTGCAAGAGCCCTGTCTTGGGACTTCAAAGAAGCTCTTGTGGCAAGCTCAGATATGTACTATTCACTGTATTCTCTGATGGCTCAGTGTCATTCAAGTTTAAACACAAATATGTTGGAGGCACGAGCCTCCAAGTGTTTCTCTTCAGCAGCCTCTTGACTCCTACTGTCCTCCCTCCTCCCACAG
Seq C2 exon
GATGTCCTCTAGGGTTTTATGGAAAAGATTGTGCACTGATATGCCAATGTCAAAACGGAGCTGACTGCGACCACATTTCTGGGCAGTGTACTTGCCGCACTGGATTCATGGGACGGCACTGTGAGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145794-MEGF10:NM_032446:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005319=Laminin_EGF=PU(63.0=65.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)