RnoINT0091315 @ rn6
Intron Retention
Gene
ENSRNOG00000013674 | Megf10
Description
multiple EGF-like domains 10 [Source:RGD Symbol;Acc:735084]
Coordinates
chr18:52346699-52349145:+
Coord C1 exon
chr18:52346699-52346827
Coord A exon
chr18:52346828-52349016
Coord C2 exon
chr18:52349017-52349145
Length
2189 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
3' ss Seq
TGTTCTCCGACCTTACACAGGAT
3' ss Score
7.11
Exon sequences
Seq C1 exon
CCTGTCCACCAGCCCACTGGGGTCCGAACTGCATCCATACATGCAACTGCCACAATGGAGCCTTTTGCAGCGCCTATGATGGGGAATGCAAATGCACTCCTGGCTGGACGGGGCTCTACTGCACTCAGA
Seq A exon
GTAAGCAAGGGGCCTTCCAGGGTTCACCAGGGGAGCCAATGGAAGAAATAGGCTCCCTGTTTGCCCATAGGTATGTTAGGTCAGTGAGGGCCCCTTCAAAGCACATGCTACCTCCTTTAGGACCTCTAGAGAGCTCCCTTTCTGTGTGTTTAAGAACCCCACATTACAGGTATCCTTTGGCTCGCTTTTATCAGGACATTGAGGTATTCTAATGTGTAATTGATTTCCCTTCTCTCTCTGTCTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTGTCTCTCTCTCTGTCTCTGTCTCTCTCTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCACAGACTGTTTTTCTGTGTGTGAAATGCTTCCATTTCTTCTGACTGTGCAAATGTGAGAGTAAACGATGGGGTTTGGAAGTCAGTACAGACACACACACCTCACTGCTTGGCTTACTGTGTGCTCACAGAGAAGTTTACCTCGAGGAACCAACCAACTCCAGATACCCAACCCTCATCCCACAGTGTCTGATTCGGGGCATCTGGATGGGGATCTGTGAATTTGCATTTCTGTCCATTGGTGATACTGTCAGCCCAGGTTCATGTTTTAAAAACAATTTCTCCAGTTCTTACTCCTAGCCCATATCTCATATGACCCTTCATTTAACCCCACGTGGTGTTTAGCATCACACCATGCAGTGTGCATGTACTTCTTTCTGCTAAGTCAAGGAAACAAACCAGGAAGGCATTTATTAAGGATATTATCAATAGTAACATAACTTAGTAATGTAACATAAAAATAGCCATGTCAAAGAAAAAAGATGAATTAGGAAGTAGGTATTTCTATTTAATACTATTTTGTATATATAACAGAGAAAAGCTGAAAGGAGACTTCTAGAAGTTTCTGGGATGAGGGATGGCTGTTGGCCCAAGATCTGGAAGACAGAACTGCAAGGACAAATTTGAAAGCTATTCTTTAAAGACTTAAAGTCATAAAGATTCTTGAACTCCTTAGGAGGGAAGCACACCTAGGTCACCTATAATTTTAAAGGCAAAGGAACCTTTTAAAGTGGACAAAGCAGCATGCAGTGGCACCTGCATGGGTCTGGTCCTACCACAGCCCTGCCTGCCATCCTGCCCTTTACCTGTGACTTGGGATACTTGGGGCTTAGCTCTTATCTGTAGCCTAGGAAGACCCAGCCCTGTAATGGTAGGGCACCAAAGAGTAAATGGCAAAACGAATGAAAAGAACCCAGTACAAGACGGGTGTCAAATAAATATGTGGTATGGGGGAATGCCATTGTGTGCTGAGATCTGTGTGTCACTCCTGCTTCTTAAAATTCCAGCTCTCCTTAAATGGCAAAATCAAGGCATGGGCAGTATTTAGAAACAACTGACAAATCTGCTGTATTGAAACTTTTGTCCTGCCTTAAACACTCCTGCAGAGCAGCTGCTGACCCATATAAGCCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGTCTGTGTCTGTGTGTGTCTGTCTGTCTCTGTGTGTCTGTCTGTCTGTCTGTCTCTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCTCCCCAGGCTCCTTGTGATGTAAGTCTTGGAAGCCATGTAGCCAATGTGAAGGTTTAAAGTACTTTCTAAATCCTCTATGAAACACAGCTGGTTTTGGCCTTAAGGGTTCTATCCCATATATTTGATAACAGGAATACTACAATTTAAGTTAAAAATGGATACAGTAGACAGGACTAGTAGAAGAATTTGAGTAATTTTGCACTAAAGGTAAAAACATGCCACCTATCTAAATACGAAGTACTCACTACAGTCCAGGGAACTCAAAACCAGGATTCTAGAAACTGAGTGAAGAATAAAAGAGAATACTGCATCCTTCCCGGGCTCCAAGAACTTTGTAGAAGACACTGGCAATGGTTATACTGACAGCTAGGGACTCTCCCACCCCCAGTTTGTAGATGACAATCTCCTTGCAGGAGACTTAAGACTTCTGAGCAGCCCTGTGACAGCTGAGATACGTGGGAAGGCCTTTACTCTCCAACAGTGTCCCAAGGCCTTCAAGTCCACCTACTGGTGCATGCAGGCAGGGAGCCATGCTTCTCCTAGGTAGTCCTCTGACTTCCGTTGTTCTCCGACCTTACACAG
Seq C2 exon
GATGCCCTCTGGGCTTCTATGGCAAGGACTGTGCACTGGTATGCCAATGTCAAAACGGAGCTGACTGCGACCACATCTCGGGGCAGTGTACCTGCCGCACGGGATTCATGGGACGGCACTGTGAACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013674:ENSRNOT00000037901:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005319=Laminin_EGF=PU(63.0=65.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]