GgaINT1018300 @ galGal4
Intron Retention
Gene
ENSGALG00000002722 | MST1
Description
hepatocyte growth factor-like protein precursor [Source:RefSeq peptide;Acc:NP_990544]
Coordinates
chr12:2481367-2481672:+
Coord C1 exon
chr12:2481367-2481497
Coord A exon
chr12:2481498-2481569
Coord C2 exon
chr12:2481570-2481672
Length
72 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTCCCCCTGCCTGTCCCCAGAGT
3' ss Score
10.64
Exon sequences
Seq C1 exon
GGACCTGCAGGAGAACTACTGCCGCAACCCCGATGGCTCAGAGGCCCCGTGGTGCTTCACCACCCGCCCCGGCATGCGCGTCGCCTTCTGCTTCCACATCCGTCGCTGTGACGACGAGCTGGACGCGGAAG
Seq A exon
GTGAGCCCCCACCACGTGGGTGCCCCACCGGGGTGTCCACCAGCAGTACCAGCTCCCCCTGCCTGTCCCCAG
Seq C2 exon
AGTGCTACCACGGCCACGGTGAGCGGTACCACGGCCACGTCAGTAAGACGCGCAAGGGCATCACGTGCCAGAGGTGGGACGCCACGACACCCCACGTGCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002722:ENSGALT00000004292:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(45.6=80.0)
A:
NA
C2:
PF0005113=Kringle=PU(41.8=94.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGAACTACTGCCGCAAC
R:
CCCTTGCGCGTCTTACTGAC
Band lengths:
182-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]