MmuINT0101369 @ mm10
Intron Retention
Gene
ENSMUSG00000032591 | Mst1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:MGI Symbol;Acc:MGI:96080]
Coordinates
chr9:108082820-108083131:+
Coord C1 exon
chr9:108082820-108082950
Coord A exon
chr9:108082951-108083028
Coord C2 exon
chr9:108083029-108083131
Length
78 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
CTCTTGCCTGCCCACCACAGGAT
3' ss Score
7.79
Exon sequences
Seq C1 exon
GGACCTTCGTGAGAATTTCTGCCGGAATCCTGATGGCTCCGAGGCGCCTTGGTGCTTCACATCTCGACCTGGTTTGCGCATGGCCTTCTGCCACCAGATCCCACGCTGCACTGAAGAACTGGTGCCAGAGG
Seq A exon
GTGAGGCTGGAGCGGGGGTACAGAATCTGGGCAGGAATCAACCCAGGGCTGACCACCGCTCTTGCCTGCCCACCACAG
Seq C2 exon
GATGCTACCACGGCTCAGGTGAACAGTATCGTGGCTCAGTCAGCAAGACGCGCAAGGGCGTTCAGTGCCAGCACTGGTCCTCTGAGACACCGCACAAGCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032591:ENSMUST00000035211:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.257
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(45.6=80.0)
A:
NA
C2:
PF0005113=Kringle=PU(41.8=94.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTTCACATCTCGACCTGG
R:
TGTCTCAGAGGACCAGTGCTG
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types