RnoINT0094909 @ rn6
Intron Retention
Gene
ENSRNOG00000019680 | Mst1
Description
macrophage stimulating 1 [Source:RGD Symbol;Acc:3114]
Coordinates
chr8:116860058-116860369:+
Coord C1 exon
chr8:116860058-116860188
Coord A exon
chr8:116860189-116860266
Coord C2 exon
chr8:116860267-116860369
Length
78 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
GCTCTTGCCTGCCACCACAGGCT
3' ss Score
5.31
Exon sequences
Seq C1 exon
GGACCTTCGTGAGAATTTCTGCCGGAATCCTGATGGCTCCGAGGCGCCTTGGTGCTTCACATCTCGACCTGGTTTGCGTGTGGCCTTTTGCTACCAGATCCCACGCTGCACAGAAGAAGTGGTGCCAGAGG
Seq A exon
GTGAGGCTGGAACAGGGGGTACAGAGCCTGGGCAGGAATCAACCCAGGGCTAACCACCGCTCTTGCCTGCCACCACAG
Seq C2 exon
GCTGCTACCATGGCTCAGGTGAACAGTATCGTGGCTCAGTCAGCAAGACACGCAAGGGCGTTCAGTGCCAGCACTGGTCCTCAGAGACACCACATAAGCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019680:ENSRNOT00000026711:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.257
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(45.6=80.0)
A:
NA
C2:
PF0005113=Kringle=PU(41.8=94.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTTCACATCTCGACCTGG
R:
TGGTGTCTCTGAGGACCAGTG
Band lengths:
172-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]