BtaINT0095651 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011585 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51083439-51083758:+
Coord C1 exon
chr22:51083439-51083569
Coord A exon
chr22:51083570-51083655
Coord C2 exon
chr22:51083656-51083758
Length
86 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
CCCTTGTCCGCCCACTGCAGACT
3' ss Score
8.21
Exon sequences
Seq C1 exon
AGACCTTCGGGAGAACTTCTGTCGAAACCCCGACGGATCGGAGGCGCCCTGGTGCTTCACATCGCGGCCTGGCATGCGCATGGCCTTCTGTTACCAGATCCGGCGCTGCACCGACGACGTGCGGCCCGAGG
Seq A exon
GTAAGGCCTAAGCTGGGGCTGGAGGCACGGAGCCGGAGGGCTGGGGCGAGAACCGGCTGACGGTCTCCCTTGTCCGCCCACTGCAG
Seq C2 exon
ACTGCTACCATGGCGCGGGGGAACTGTACCGCGGCTCTGTTAGCAAGACCCGAAAGGGCATCCGGTGTCAGAACTGGTCGGCTGAGACGCCACATAAGCCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585:ENSBTAT00000030663:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(45.6=80.0)
A:
NA
C2:
PF0005113=Kringle=PU(41.8=94.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTTCTGTCGAAACCCCG
R:
CCCTTTCGGGTCTTGCTAACA
Band lengths:
178-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]