MmuEX0029864 @ mm10
Exon Skipping
Gene
ENSMUSG00000032591 | Mst1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:MGI Symbol;Acc:MGI:96080]
Coordinates
chr9:108082465-108083131:+
Coord C1 exon
chr9:108082465-108082660
Coord A exon
chr9:108082820-108082950
Coord C2 exon
chr9:108083029-108083131
Length
131 bp
Sequences
Splice sites
3' ss Seq
TAAGGGAAGTGACTACTCAGGGA
3' ss Score
-4.1
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GGCCTAACCTGCCTCCGACCGTCAAAGGATCCAAGTCACAGCGGCGCAACAAGGGCAAGGCTCTTAACTGCTTCCGCGGAAAAGGTGAAGACTATCGAGGCACAACCAATACCACCTCTGCGGGCGTGCCCTGCCAGCGGTGGGATGCGCAGAGTCCACACCAGCACCGCTTTGTGCCAGAGAAATATGCTTGCAA
Seq A exon
GGACCTTCGTGAGAATTTCTGCCGGAATCCTGATGGCTCCGAGGCGCCTTGGTGCTTCACATCTCGACCTGGTTTGCGCATGGCCTTCTGCCACCAGATCCCACGCTGCACTGAAGAACTGGTGCCAGAGG
Seq C2 exon
GATGCTACCACGGCTCAGGTGAACAGTATCGTGGCTCAGTCAGCAAGACGCGCAAGGGCGTTCAGTGCCAGCACTGGTCCTCTGAGACACCGCACAAGCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032591-'13-12,'13-11,16-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=0.000 C2=0.257
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(53.2=63.6)
A:
PF0005113=Kringle=PD(45.6=80.0)
C2:
PF0005113=Kringle=PU(41.8=94.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAAGGCTCTTAACTGCTT
R:
CTTGTGCGGTGTCTCAGAGGA
Band lengths:
242-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types