BtaEX6095370 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011585 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51083100-51083758:+
Coord C1 exon
chr22:51083100-51083268
Coord A exon
chr22:51083439-51083569
Coord C2 exon
chr22:51083656-51083758
Length
131 bp
Sequences
Splice sites
3' ss Seq
TAAGCAGCGTGCCTGCTCAGAGA
3' ss Score
0.2
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GGTCCGAGGCACAGCCGAGCCAGGAAGCCACGACGCTCAACTGCTTCCGCGGGAAAGGCGAGGGCTACCGGGGCACAGTCAACACCACCGCCGCAGGCGTGCCCTGCCAGCGTTGGGATGCACAGCTCCCACATCAGCATCGCTTTGCGCCGGAAAAGTATGCGTGCAA
Seq A exon
AGACCTTCGGGAGAACTTCTGTCGAAACCCCGACGGATCGGAGGCGCCCTGGTGCTTCACATCGCGGCCTGGCATGCGCATGGCCTTCTGTTACCAGATCCGGCGCTGCACCGACGACGTGCGGCCCGAGG
Seq C2 exon
ACTGCTACCATGGCGCGGGGGAACTGTACCGCGGCTCTGTTAGCAAGACCCGAAAGGGCATCCGGTGTCAGAACTGGTCGGCTGAGACGCCACATAAGCCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585-'10-9,'10-7,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=0.000 C2=0.143
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(53.2=73.7)
A:
PF0005113=Kringle=PD(45.6=80.0)
C2:
PF0005113=Kringle=PU(41.8=94.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGACGCTCAACTGCTTC
R:
GGCTTATGTGGCGTCTCAGC
Band lengths:
242-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]