RnoEX0056122 @ rn6
Exon Skipping
Gene
ENSRNOG00000019680 | Mst1
Description
macrophage stimulating 1 [Source:RGD Symbol;Acc:3114]
Coordinates
chr8:116859713-116860369:+
Coord C1 exon
chr8:116859713-116859908
Coord A exon
chr8:116860058-116860188
Coord C2 exon
chr8:116860267-116860369
Length
131 bp
Sequences
Splice sites
3' ss Seq
TAAGGGAAGTGACTACTCAGGGA
3' ss Score
-4.1
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GGCCCAACCTGCCACCGACCACCAAAGGATCCAAGTCACAACAGCGCAACAAGGTCAAGGCTTCGAACTGCTTCCGCGGAAAAGGTGAAGACTATCGAGGCACAACCAATACCACCTCTGCGGGTGTGCCCTGCCAGCGCTGGGATGCGCAGAATCCGCACCAGCACCGCTTTGTGCCGGAGAAATATGCTTGCAA
Seq A exon
GGACCTTCGTGAGAATTTCTGCCGGAATCCTGATGGCTCCGAGGCGCCTTGGTGCTTCACATCTCGACCTGGTTTGCGTGTGGCCTTTTGCTACCAGATCCCACGCTGCACAGAAGAAGTGGTGCCAGAGG
Seq C2 exon
GCTGCTACCATGGCTCAGGTGAACAGTATCGTGGCTCAGTCAGCAAGACACGCAAGGGCGTTCAGTGCCAGCACTGGTCCTCAGAGACACCACATAAGCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019680-'15-11,'15-10,18-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.470 A=0.000 C2=0.257
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(53.2=63.6)
A:
PF0005113=Kringle=PD(45.6=80.0)
C2:
PF0005113=Kringle=PU(41.8=94.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAGCGCAACAAGGTCAAG
R:
TGGTGTCTCTGAGGACCAGTG
Band lengths:
250-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]