DreEX6024400 @ danRer10
Exon Skipping
Gene
ENSDARG00000103308 | mst1
Description
macrophage stimulating 1 [Source:ZFIN;Acc:ZDB-GENE-020806-3]
Coordinates
chr6:53409059-53412515:-
Coord C1 exon
chr6:53412344-53412515
Coord A exon
chr6:53411177-53411307
Coord C2 exon
chr6:53409059-53409161
Length
131 bp
Sequences
Splice sites
3' ss Seq
CTTGTGTCTTTATTTATTAGGGG
3' ss Score
8.45
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
CTGAATTTCCCAAGCGTCGTCTTCGCTCCAGCTACACCACTAACTGCTTTCGGGGGCGAGGCGAGGATTACAGGGGCAAAGTCAACGAAACAACCTCTGGAATCCCTTGTCAGCGTTGGGATGCCCAGAAACCTCACGAACACCCATTTTTCCCTAAAACCTACGAGTGCAA
Seq A exon
GGGTTTAGAGGAGAACTACTGTCGTAACCCGGACGGCTCTGAAGCACCGTGGTGTTTTACGTCTCTGCCGGAGATGCGGACGGCGCTCTGCCTGCAGATCAAACGCTGCGCTGATGACATCGAGGCTGAAG
Seq C2 exon
ATTGCTATAATGAAATCGGCAAAAACTATCGAGGTGTGGTCCGCAAGACCCGGAAAGGAATCCTCTGCCAGAAATGGAGCATCAACACACCTCACAAAACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103308-'10-12,'10-10,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.000 C2=0.057
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(53.2=72.4)
A:
PF0005113=Kringle=PD(45.6=80.0)
C2:
PF0005113=Kringle=PU(41.8=94.3)
Main Skipping Isoform:
ENSDART00000162791fB3969
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCTCCAGCTACACCACTAA
R:
GTGAGGTGTGTTGATGCTCCA
Band lengths:
245-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]