GgaEX1037241 @ galGal4
Exon Skipping
Gene
ENSGALG00000002722 | MST1
Description
hepatocyte growth factor-like protein precursor [Source:RefSeq peptide;Acc:NP_990544]
Coordinates
chr12:2481134-2481672:+
Coord C1 exon
chr12:2481134-2481296
Coord A exon
chr12:2481367-2481497
Coord C2 exon
chr12:2481570-2481672
Length
131 bp
Sequences
Splice sites
3' ss Seq
CCACGTGGCCCCTCCGCCAGGGA
3' ss Score
5.12
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGAAACGCCCGCGGCCCATCAACGTCACCACCGGCTGCTACAGGGGCAAGGGCGAAGGCTACCGGGGCCGGGTGAACGTCACCGTGTCGGGCATCCCCTGCCAGCGCTGGGACGCGCAGACACCCCACCGGCACCACTTCGTGCCCAGCAAGTACCCCTGCAA
Seq A exon
GGACCTGCAGGAGAACTACTGCCGCAACCCCGATGGCTCAGAGGCCCCGTGGTGCTTCACCACCCGCCCCGGCATGCGCGTCGCCTTCTGCTTCCACATCCGTCGCTGTGACGACGAGCTGGACGCGGAAG
Seq C2 exon
AGTGCTACCACGGCCACGGTGAGCGGTACCACGGCCACGTCAGTAAGACGCGCAAGGGCATCACGTGCCAGAGGTGGGACGCCACGACACCCCACGTGCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002722-'10-13,'10-11,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.143
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(53.2=76.4)
A:
PF0005113=Kringle=PD(45.6=80.0)
C2:
PF0005113=Kringle=PU(41.8=94.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGCCCATCAACGTCAC
R:
CGTCCCACCTCTGGCACG
Band lengths:
234-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]