GgaINT1018546 @ galGal4
Intron Retention
Gene
ENSGALG00000006520 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_990605]
Coordinates
chr14:7564344-7564961:-
Coord C1 exon
chr14:7564833-7564961
Coord A exon
chr14:7564433-7564832
Coord C2 exon
chr14:7564344-7564432
Length
400 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
GCCTTTTCCTTCACTCCTAGGAT
3' ss Score
10.74
Exon sequences
Seq C1 exon
GCTCAGATGAAGGACTATCAACGAGACCTGGATGATGCACGGGCTGCCAGAGAAGAAATATTTGCAACAGCCAGAGAAAATGAGAAGAAAGCCAAGAACCTTGAAGCTGAACTCATCCAGCTTCAAGAG
Seq A exon
GTAAAATGGAAAACTTTTAAAGCAGTATTACACAGAATATACATGATCTTCAGTAGCTAGACAGAACTGCATTGACATGGTATAATAGCTAGAGATGAAAAATTAAAAACAAAATTTGTAATAAGTTTCACACACTCCAGTTAAGTTGTTGGATATACATCTGAGCATAGCCAGGTCAAGCTGGAAAAAAAAAACCCACCTTGGAGGAAAGCACAATTCAGGTTTAAAGGGAAATATACTCTACGATCCAACACAAATTGTTCTTAATAGCTATAAATTCTTCCCTGGCATTTATGATTCAAGAATTTATTCCATTAACCAGACAAACTTAGAACAGTTTTAGAGTTTGTCAGAACACTTGCTTATTTCTTTACTATGCTGCCTTTTCCTTCACTCCTAG
Seq C2 exon
GATCTGGCTGCTGCAGAGAGAGCTCGCAAACAAGCAGATCTGGAGAAAGAAGAGATGGCAGAGGAACTTGCAAGTGCTAATTCTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000010534:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.837 A=NA C2=0.900
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGATGAAGGACTATCAACGA
R:
TCCCAGAATTAGCACTTGCAAGT
Band lengths:
217-617
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]