GgaINT1018572 @ galGal4
Intron Retention
Gene
ENSGALG00000013781 | MYH7
Description
Gallus gallus myosin, heavy chain 7, cardiac muscle, beta (MYH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001001302]
Coordinates
chr19:11025-12014:+
Coord C1 exon
chr19:11025-11204
Coord A exon
chr19:11205-11870
Coord C2 exon
chr19:11871-12014
Length
666 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TTCTTGGGATCTCTCTGCAGACC
3' ss Score
9.25
Exon sequences
Seq C1 exon
ATGGAGGCAGCGCTGGGTGTAGCTGCCCCTTTCCTCCGTGCCCCTGAGGGGCCCCGTCCAACCCCAGCAGGCGACACTCGAGGGCTCTGCTTCGTGCCCCACCCGCAGCTTGAGTTCATCCGTGCCCGTGTCACTGCCCGGGCAGGGAATGGGGTCACCGTCACCACAGAGATGGGGGAG
Seq A exon
GTGAGAGATGAGGTCGTGGAGGGGGGTTCATGAGGTGGGGTCAGTGGGGATCAGTGGAGCTGGTCAATGGGATCAATGCAAGTTGATTCAATGTGGTCAGTGGGAGTTAGTGGGGTGGGGTCAATGGATGTGAGTCAGTGAGGGTCACTGGAATTCAGTGGGGTGGAGTTAGGGGTGTGGGGTCAGTGAGGATCAATGGTAGTCAATGGGGTAAACAGAGTGGGGTCAGTGGGGTGGGGTCAATAGAGGGTGATGGATGAGAAAGGGTTACTGTGGGGGTTTGGGATGGAAAGAAGAGATTTGGGTAAAAGTTCAGCTTGGACAATTTGGAGAAGAAAGTGTTAATGGTGGATTTGGGGTGGAGAGGATTGATTTGGGAGATTTGAGTTTTAAAGAGAGAATGTTGGGATTTGGGGCAAAAAAAAAATATTTGGTGGGGCTTCGGGTGAAAAAAAGTAACTTAGGGGACACTTAAAAGGCAAATATGATGTAGTGGAGTGAATAAAAAAATGTAATTTTGGGGGATACCTTAGTGTGACAAAACTGATTTCGAGGGGATTTGGGGCTGAAAAGAGGGAATTTGGTGGGATCTGGGATGGAAAAGTTAAACTTGGGATTTTGAATTGAAAAAGTTGCCTTTGGGGGATTCTTGGGATCTCTCTGCAG
Seq C2 exon
ACCTTGACAGTGCCCGAGGCCGATGTGCACCCCCAGAACCCCCCAAAATTTGACCGCATTGAGGACATGGCCATGCTGACGTTTCTCCATGAGCCCGCCGTCCTCTACAATCTCAAGGAGCGCTATGCTTCCTGGATGATCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013781:ENSGALT00000022380:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.367 A=NA C2=0.312
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PU(78.6=55.0)
A:
NA
C2:
PF0273614=Myosin_N=PD(16.7=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCAGCGCTGGGTGTA
R:
GATCATCCAGGAAGCATAGCGC
Band lengths:
318-984
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]