GgaINT1021573 @ galGal4
Intron Retention
Gene
ENSGALG00000006121 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr5:11155756-11158217:-
Coord C1 exon
chr5:11158050-11158217
Coord A exon
chr5:11155865-11158049
Coord C2 exon
chr5:11155756-11155864
Length
2185 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
3' ss Seq
GTATATGCTTTTTCTCTCAGATT
3' ss Score
8.99
Exon sequences
Seq C1 exon
AATAATTTTCCCCATCCAGATTTCACAACTGCCTTTGGAATCAGTCTTATGTCTGACTTTGTTTGGAATCCTAAATCAAAGTAGTGGAAGTTCTCCTGATTCAAATAAGCAGAGAAAGGGCCCTGAAATGTTGGGTCAGGTTTCTTTACCTCTTTTTGATTTTAGGCG
Seq A exon
GTAAGTATCCAAAATATGGGTAAGCATATTAATATGATTTTATTCTATATAAAGTTTAATCTGCTCCCGTAATTATAGAATCTGCTTCTTTGGTGCTGAATGTATTAGAAAGTGACAAAGGTAGCAATCTTAAACTGTATTCATGTGGGAATAACACTGTCAATTAAATATGTTATAGTATTTCCTTTTAACTGGTGAAAAACCTGCAGGGGTATGTTGAATGTTTGGATTAAAGCATTAGTAATACCACTGCTGACCCATGATAACATGGACCAAAAGAGGTCATCTTAGCACCACAGTTTGTGCAGCATGCAGCAGCTGAGGATATGATCACAGTGTGAGTAGTCTTTCAAGGAATCCACTGACATTCAGATCAGGATCTGTTCCTTCTAAATTATACGTGGTTTAAGTATCAATAGACATCACTGCCTGCTGAAATGATAGCCTTCCTTCTACACTGAAAGAGTGTAGTCTTGATGAGTGTGGCATTTCATGAGTTTTAAAAGTATGTTATATTGGCCAGAGACAGTTCAGTTGCTATTCGTGTATATTTTAGCAGATGAAGTGCAGACAGCCAGTACATGAGTGATAGAGAATGCAAAAGAAAGTGTTTGCAGCAAGCAATGGATTCAGTAGGAATAGTGTCAAGTGCAGTACAAAACAGAGCAGAATCCTGGCAGCAGGTAAATGTACTGTCCTTCCCTGTCACTGCATAAGAAATCTGCCACAAACTGTTTTGAGATAGGATAATTAACTCTTCTTCACTCGTTTCTGTTTGTAGATCTAAATATGGTGATGGCTCAAACTTTTATAGATAAAATACTTATAAATACTGCACACCCTGCATTAAAAGTACTTCTTTTTTTAGAGGCATCTTTGTCTTGGCTGTAAAATATTTCATGCTGTGTGTTTCAGTGAGTTTATGTATGTAGGAACCAAACTAGAGGATTAAGTTTGATAAAATATATCTTACCTTTTGGAAAGATTAATTTTTCTAGCCTGAACATACGTATGTTTTAAAATACGTATGTACTTTCATAAATAGGCAAAACGAACCATTCCTGCTATTAACCTGTAAAAGTAACAGAGATCTTTCTGGTCTTTCTTCAAGTGCAGTTGCAGATCCTCTTATGCTCTTTTATCACTTAAAATGGAAAGCGTTCTATAATTTTCCTCAGTTAAGTGTTCCTGGATTTTCCTTCTACTTGCAACTTGCATTGCTAGGTGTATTCCAAAGTGCTAACTGTTCTGGTAGCTCGTTTATGAAACTTTAATAAATAGGCTTGAATAATGGATACCAAAATTAGGCATAATGTTGCAGAAGTGATCACACCATTGTGAAATAACTTTGGGAGTTCCACTTAAGATTTTATTTTCGTAAGTGATTCTGACTTCCAGATCCTACTAGAAGCTCATATTATCTACTTGTCAGCGAAGACCCCTAATCTTTCTTGGTCTCTTACTACTCTCTATTGCTTATGTCTTTACATGTGGTTTGCATCCTTTGCTTCTACACGGAGCTCTGTGTGTTCTCTTTCTGCTTTTGTATGCTGATCATTCCAAAAGGCTGCAGCTATCTAGCAGTTTAGGCACTGCTGAACTGCAAAGATAGCTTGCAGCTGCTTTCTGTCTCCACTGAGAACTCAATCTATTTTCACAAATGACTCTTCTTTCAGTCTTCAATCTAAATATTGCACTTTGATCTCCTAAGTGCTGCATTTCATAGTATGTGATCACAAACATCTTTTTTTTTTAATTTAAATTGCAAAATTAGTCTTATTTCTTGCTGCACCATACTGTCATTGTAGTTAGTTTGGGGAGAGAACTGTATTTTCTGTTTATGTAGAGTACTGCAATAGGGTGTGTTGCACAAGAGAATGCTGAATGGCCTGTATAGGGCAGCTATAGAGTTGCTAGAGTCTAATATACTTGCAATCTACAGAAATTAAATCTAGACTTGTGTAATTACAGATATGAGGCAAATATTCTAGTTGCAGTTGGAGGCAGGGGCTAAAAACTGTAGCTAACTAAACCATGGGAAGAACAAAAAGTCATAGATAGGCCTCAATATTTCTGACTTGTTTTCTTCATAGCAACCATTGGGCTTTTTCAGATGGTATTTTAGTAACTAATACTCTGTTGAAGCAGATTGTGACTTAATACCTGTATATGCTTTTTCTCTCAG
Seq C2 exon
ATTGCTATCTTGTGGGACAAAGCTCCTGCAACTCTGGACTTCATTACATCCGAGTCATGCTTCAGGGACGGCCAGTAAGAAAGAAAATATGGGAAGAATAGTACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121:ENSGALT00000009877:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.175 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=FE(40.0=100)
A:
NA
C2:
PF0079219=PI3K_C2=FE(25.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]