GgaINT1021575 @ galGal4
Intron Retention
Gene
ENSGALG00000006121 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr5:11154066-11155004:-
Coord C1 exon
chr5:11154862-11155004
Coord A exon
chr5:11154255-11154861
Coord C2 exon
chr5:11154066-11154254
Length
607 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGT
5' ss Score
7.43
3' ss Seq
TGAAATGTCTTTGTCTGCAGCCT
3' ss Score
8.31
Exon sequences
Seq C1 exon
GTTGATTTTCCATCCCATGCTTTTGATATTGAATATAAAATTCCTCAAGCTGCAAAGACTACTGTGCATCATTCCATAGAAGCATTAGAAAAACCACTGAGAGAACGTCTCCTTGCCATTCTCTCTAGGGATAACACTATTGG
Seq A exon
GTATGTTCATCTCTTTGTAGCTCTGGTCTGTTTGTACATGACACTGTGCAGCTAGGGCGTAGAATGCTCATTTATTTTGGAGATGTTTTATTATGCCTCTATTATATTTTTGAAGGTCTTTGGAGATTTTATCAAGAGATTCAACAAAACCTGTAAAATAATGCTGACTTCATAAATTCATTTGTATTTTCTGTGGCTAGCGCTGTAATATTCTCCTACTACTCTGACTGCCTGTTGCTTATGCCTGTTCCCACTTGGTATTTCTTCAGTTATAAGGAGCAGTTTCAGTGGAGGCTGCTTGTACTCCATGAAAATATTTCTGACAAGTTTTCCTAGTCATCTGCACCAACCTAATGTTAACTGCCTGTTTTTTTTTCTGACTTCACTAAAATCTATTCTTGTTTTATGCAAATTACAGCTTTGAACAACTGTTTCCATAATGTTTGAGATTTGTTTTGGCTCTGCTTTAGACTTGCATGGAGGAAATAGCCATTTTACAAGTCATGTAATTTAGTGTGTAAAATTGTATACAGTGACCAATGGCATTGGGATTATGTGGGTGATGCTCTTTAACTTGCAGTACAAACTGAAATGTCTTTGTCTGCAG
Seq C2 exon
CCTATCAAAAGAAGATAAAGAATTTTTGTGGGAGAGGAGACATTATTGTCATGGTCATACTAACAGCTTACCAAAAATACTGGCTAGTGCCCCACACTGGGACTGGGCAAGTCTTCCAGAAATATATTCATTACTTCAGCAGTGGCCTCCTTTATCACCCTTAGCTGCACTGGAACTACTTGATTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121:ENSGALT00000009877:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=PD(3.6=10.4),PF0061315=PI3Ka=PU(12.0=45.8)
A:
NA
C2:
PF0061315=PI3Ka=FE(34.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGATTTTCCATCCCATGCTT
R:
TCAAGTAGTTCCAGTGCAGCT
Band lengths:
326-933
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]