GgaINT1022704 @ galGal4
Intron Retention
Gene
ENSGALG00000003776 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr17:6199406-6202329:+
Coord C1 exon
chr17:6199406-6199625
Coord A exon
chr17:6199626-6200262
Coord C2 exon
chr17:6200263-6202329
Length
637 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GTTTGTTGTTTCCTTCATAGAAA
3' ss Score
8.57
Exon sequences
Seq C1 exon
GAATTATGAAGCCCATGATTCAGCAGGACTCCATCGGTGGGAACAGCTGTCGATCTGAAGATCAGAACTGTCAGGCAGGTCAGGTGGAAAGGAAGGCTGCTCCCATGGACCCTGTGCCAGTATGGGGCCAGGAGAGCTATGCATCTCTGCAGAGCAAAGGGTACTCCCTGTCACATCAAAAGCAGTCTGACAACATGACCATGGAGGGGCTGCATGCCAG
Seq A exon
GTGAGTGCAGATCTCCCCCATCCTCACGCATGCTATGGTAGGAGGCTGTGCTGTCGTAAGAGGCCATTTCCCACTGAAAAGCAGGCTTAGAGATGACCTACAAGATGTCAGACAGGCCAGGATACTATTATGGTAGAACCCTTATGTTGTTGAGTTTTTATGTTGTGAAGATGCTTACAGACTGACTTAACTCAGTTTTTCTGGCTGATGCTAGTCCAGACTGACCAGCTTGGAGCCTTGTGGGGCTGTCTGTTCAGTAGGAGTTGCTTGTCATTTACATAGATAGGTTCTGAAAATGATGAGTCAGAAATTCTTGTCATTTCTAGTTTGTCTCCTAATTTTTTTTGGACTTCCTGAATTCAGTTACTTGTTGGGGGCTGCGTTTCCCTTTATTTCTTAAGTTTGCTGCCCAACACAGGAACTGCTTTCTTTATCATTCATTGATTGGACAAACCAGATAGTACAGCCTGGGGCCATAGCAGATCTGGCCTGCATTCAGGTACTTACAGGCTCATTGTCTCATGGTATAGAACAAAACCTAATTTATTTTTTTGTGCCTCTTGTGCTCAACTTGGGCCCTTGGGTGCATGGTGTGCTTTGCGTTAGCTGACTGTTTTGTTTGTTGTTTCCTTCATAG
Seq C2 exon
AAATGGCAGTTCTTACTCTTCCTCTCCCGGAAGGCCAGAGAATCTGAACACCCAGCGAGATCTCTTTGAGGAAAGAGGGGAGGAATACTTGAATGCTTTTGACAAGAAGACCCAAGGAGACTTTGACAGCTGCCTGTCTTCTCAGAGGCTAGGCCAAGATCTCTTATTTCAGCATCAGGAGAGTGTGCAGGAAACCTGTCCTTCCAGCAACCGCCATGCAAACTTGAGATGTTCACCTCTAGAGCCTGACTTTATCCAAGCAGAGAAGAAACCGGAATATAATGGCTGGGATATCAGCCACCATCAGAAACCTTCAGAGCCTGCAGCAGAGATTACTGAAGAAGTTCCGAGAAATGAGCAGTCATTCGCTGCTGACCCATGGAAGAAAGAAGGAGCTAGTAATACCAAACAGCCTGCTGAAGAGACAACAGAGTGGGCCCCTGAAAACCGAAGCACAGGTGTTCAACAGCAGGAGCAAATTGGGAGGACACGGCGATCAGGCCCAATCAAAAAGCCAGTTCTGAAAGCCCTCAAGGTGGAGGAGAAGGAGAAGGAGATGGAGAAGGTCAAACTGGAGGGAGAGGACACCTCACGCCATCTGAAGGAGAAGGTGACTGTTCAGAAAGTGGAAAACGAATCAGACGACTCTGCAGCCTTACTGAACTCCACACGTTATCTGCTGGATGACAAAGGCTCTTCCCAAGCCAGCCTTGCCCGAGAGGCTGAGAAGTCACAAGAGGAAGAGGAGGAGGAGGAGGAGGAAGATAAGCCAGAAAGAACCTGGGAGAACAAGGTCTCCAGAGAATCCAGTGAGCTTCCTCCCACTAAAAGAAATAACTGGATCTTCATTGATGAAGAGCAAGCCTTTGGTGGGAGAGGTCAAGGGCGTGGGCGAGGGAGAGGCTTCAGAGAATTCACTTTCAGGGGCCGAGGCACTGTTGTGAGCAGTCGGGGAGTCTATAACAACCAGCGGAGCAGCCGAGGGCGAGGGCTCCGGGAGTTCAACCAGCCAGAGGACTTCCCCAGGGGCAAGCCAAGGCGACGGATTGCAAGTGAGACGCATAGCGAAGGGTCAGAATATGAGGAACTCCCCAAACGTCGCCGGCAGAGGGGCTCAGAAAACAGCAATGATGGCTCTGTGCTGGACAGAGAGGACAGTGATTTGAAGAAGGGAGACTTCAAAGAGTCTTGGAGGTCCAACAAAATCTATTCAGATGATCACACTAGTCTCGACCCTAAGATGAGGGCCCCAAGAGCTTTTGGGAGATCACTGCCACCAAGACTAAGCAACTCTGGCTATGGGCGAAGAGGTTTCATGGGCAAGGAGCCAACCCAGTGGCAAGGCAGGAGTGGGGGAGCGGGGTGGCAGGAGTACAGCCACACTTCTCCATCAGATGGTTTTGGGAGCCGGCAACAGTCTGACAGAGACTACATTCAGGATTCTTACAAACACGTGGATTCTTTCTCTAGCCGGGTTTTTGATGAGAGCCATTTGGATGACAAGAGGCACTTCTTCCAGGAGGATTACTTAGCAGATCAGGAGAACATAGAGAACAGGCCATTCAGGAGGCGGCGTCCCCCCCGTCAAGACAAGCCCCCACGCTTCAGGCGCCTCCGGCAAGAACGAGAATTGGTTGGGCAGTGGAACCCTGAGGAGGGAGGCCCCAACCTGCTGCCCAGCCAGTGGCCAGGACGGCCCAAGCTGAGCACCGCAGAGAAGAGCAGCATCTCGGGCAGACGGTCTCCTGAGCTATCCTACCAGAACTCCTCAGATCATGCCAACGAGGAGTGGGAGACAGCATCTGAAAGCAGTGACTTCAGTGAGCGTCGGGAGAGGCGAGATGGAGTTTCAGAGAGTGAGGGCCAGCTGGAGAGTGGCCTTGGGAGTGGCAGCTTGGGAGAGAAGAGAGAGCTAGCAAAGAGGAGCTTCTCAAGCCAAAGGCCGCTGGTGGACAGGCAGAACCGCAAGGCTGAGCCAGCAGGGTATGCGGAGCAGTCTGTCCGGACTGTAGGAGCAGCTTCACGATATGAGAGCCAGCAGAATGGGACACTCATAAAAAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776:ENSGALT00000005992:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.829 A=NA C2=0.926
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGTCAGGTGGAAAGGAAG
R:
AGGTTTCCTGCACACTCTCCT
Band lengths:
343-980
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]