MmuINT0023949 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr2:32067595-32070467:+
Coord C1 exon
chr2:32067595-32067811
Coord A exon
chr2:32067812-32068406
Coord C2 exon
chr2:32068407-32070467
Length
595 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTTTTCTGGTTCCTTTTCAGGAA
3' ss Score
12.52
Exon sequences
Seq C1 exon
GACTGATGAAGCCCATGATGCCCCAAGAGTCCCTCAGTGGGACTGGCTGTCGCTCTGAAGATCAAAACTGTGTGCCCTCGCTCCAAGAACGGAAAGTGACCGCCCTCGACCCAGCTCCTGTGTGGAGCCCAGAGGGCTACATGGCACTGCAGAACAAAGGCTACTCACTGCCCCACCCGAAGTCTGCTGACACTCTGGCCATGGGCATGCATGTCAG
Seq A exon
GTGAGCTTCCCTCTGCGGCTGAAGGAAGGCTCCGCAGTCCCAGTGGAGGGCCCTAGGAAGAGGCCCCGTCCCGGGAGACACAGCCCAGGGTGGGTGGGGAGGAGTGGAAGCAGGTGTGCTTGAATGTTTGATGCGAGTGGCTCTCTCTGATGGCCAGGCTGAGGCACAGGAGGAACCCCGTGGTCGTCGAACTGTGGGCATGGAGTAAAGGGGCAGAGGGTGGGCTCACAGGCCGGTGGGTCAAGAGTGGGGTCTGGGCTCGCTCCTCCTGTGCGTATAGGAGCTAGCCCTGCCACCCCAGGCCCAGGCTCCCCACTCCCAGGCTCCAGCTTGTTCATTGCTCCAGGGGACCGCCAGCTCCTCTGTCTCCAGGGCAGTTCATTGAGCTCCACTGACATCTTCACGGCCACGGACGCCAGGGGCCACCGAGCAACGAACCATAAGCTAGACCAAATGTTTGTGTTTTCTTTTCTTTTTAAAAAACTTTTTTTTTCTTTAAAACCAAACCAAACAAACCAAAACTAAGCCCTGTTCAGCATGGCGGCCAGGAACCAAGCTCCAATCACATTGACTGATTTTTCTGGTTCCTTTTCAG
Seq C2 exon
GAATGAAAGGTCTTACTGTGCCTCCCCCGGAAGGCCAGGGGGCATAAGTGCCCAGCGCGATCTCTTTGAGGAGAGAGGGGAGGAGTTCTTGAGTGCTTTTGACAAGAAGGCCCAAGCAGACTTTGACAGCTGTATCTCTTCTCAAAGAATAGGCCAGGAGCTTTTATTTCCACCCCAGGAAAATGTTCAGGAGGTGGGTGCTCCTGGGGGTTGTACCCCAAACCTCAGGTGTTCCCCATTGGAGCCTGACTTTGTCCCAGCTGAGAAAAAGCCAGAGTATGGCAGCTGGGATGTTGGCCACCAGCCAAAGGCCGCCGACACAGCCAACGGTGTCGAGCTGGAGGCTCCCCGACAGGAGCCTTCCTTTCATGTTTCCTCTTGGGAGAAGGAAGGGAGCCCCAAGAAACAGCCAAACCCGGAGCCTGAGTGGACACCTGAGCCCCGGAGCTCCAGCGGCCAGCACCAGGAGCAGCCGGGCAGGACCCGGAGGTCAGGACCCATCAAGAAACCAGTTCTTAAGGCCCTGAAGGTAGAAGAGAAGGAGAAGGCCCTGGAGAGAGGCAGGCAGGGGCTTAGAGAGGAGAGCTCACAGCGGGCCCCAGAGAAAGAACCCGTGGGCAGGGCCGAGGAGGACGAAGAGAACAACCCTGCCCTAGCCAATGCCTCCTCCGCCCTGGAGGACAAGGCTGCCTCCCGGGCTGGTTTTGCCCACGAGGCTAGCAAGCTGGATGAAGATGAAAAGGCAGATAAGACCTGGGAGAGCAGGCCCTCAAGGGAGGCCAGTGACATTCCCCCAACCAAGAGAAACAACTGGATCTTCATTGATGAGGAACAGGCCTTTGGGGGACGGGGCCAGGCCCGTAGCCGTGGCCGCGGCTTCAGAGAGTTCACCTTCCGGGGCGGCCGGCCTGCAGGCAGCAGCACAAGTGGTCTTTGTGGCACGGGTGTCCTTGGGTCTCGTGGCATGTACAGTAGTGGCCAGCGCAGTAACCGAGGCAGGGGCCTGCGTGACTTCCCCCCACCAGAAGACTGCCCCAGAGCCAAGCCAAGGCGTCGCATTGCCAGCGAGACTCACAGCGAGGGCTCTGAGTATGAAGAGCTGCCCAAGAGGCGCCGGCAGCGGGGCTCTGAGCATAGCCACGAGGGCATGCTCACGGAGAGGGACGAGGGTGCCCTGAAGGACTCATGGCGCTCCAACAGAACTTACACCGAGGACCAGGGCGGTATAGACACCCGCAGCCGGGGATCCCGGACATGCGGGAGAGCCCTCCCACCCCGCCTGAGCAACTGCAGCTATGGCCGCAGAACCTTTGTTGCCAAAGAACCTCCCCACTGGCAGAGCAGGAGCCCAGGCAGCTCCTGGCAGGAATATGGCTCCTCTGACCCGTGTGGCCCACGGCGAGGCACCGACAGAGACTACATACCAGACTCCTACCGACAATCTGACACATTTGGAAGCAGGCTTTTTGAGGACAGCCGCACGGAGGACAAGAGGTCCTTTTTCCAAGATGACCATGGGGCAGATTCTGAAAATGCAGAAAACAGGCCCTTCCGTAGGAGGCGGCCCCCACGCCAAGACAAGCCCCCTCGCTTCCGGCGCCTCCGTCAAGAGCGGGAGTCCCTGGGCCTGTGGGGACCTGAGGAGGAGTCCCATCTGCTGGCAAGCCAGTGGCCAGGCCGGTCCAAACTCTGTCCTGGGGACAAGAGTGGTCCTGGAGGTCACAGATCCCCAGAGCTTTCCTACCAGAATTCCTCTGATCATGCCAACGAGGAGTGGGAGACCGCCTCCGAGAGTAGTGACTTCAGCGAGCGTAGGGAGCGGCGAGAAGGCCTCGTGGCTGAACCCGAAGCGCAAGGGGATGGTGGCCTCTCTGGGTCCAGTTTGGGTGAAAAGAAGGAGCTGGCCAAGAGGAGCTTCTCCAGCCAGAGGCCCCTGGCCGACAGACAGAGCCGCAAGCTGGAGCCGGGAGGGTTTGGGGAGAAGCCTGTTAGGCCAGGTGGGGGTGAGCCTTCCCCCCGCTGCGAGAGCCAGCAGAGCGGGACGCCTCTGAAAGTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
-Bat2l:NM_001159634:15
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACTGCAGAACAAAGGCTA
R:
GGCTTTTTCTCAGCTGGGACA
Band lengths:
348-943
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: