BtaINT0118603 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004400 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr11:101624839-101627751:+
Coord C1 exon
chr11:101624839-101625055
Coord A exon
chr11:101625056-101625684
Coord C2 exon
chr11:101625685-101627751
Length
629 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTTTTCTGGTTCCTTTTCAGGAG
3' ss Score
11.63
Exon sequences
Seq C1 exon
GATTGATGAAACCCATAATGCCCCCGGATTCCCTCAGTGGGACTGGCTGTCGCTCTGAGGACCAGAGCTGTGTGCCCCCGCTGCCAGAAAGGAAGGTGACCGCCATTGACCCTGCCCCCGTGTGGAGCCCTGAGGGTTACATGGCGTTGCAGAGCAAGGGCTACTCGCTGCCCCATCCGAAATCCAGCGACAATATGGCCATGGACATGCATGTCAG
Seq A exon
GTGAGGCGACGCTTGGTCCTGCTGCCCTGCAGCTGAAGGAGGAATCTTGGTCCTCAGTGAGATGGGCTCTGGGAGGAGGCCCTGTCTCAGGAGACACCGCCCTCAGGGAAGGGGCGCCTTGGGAGGGACCAGTGTGCTCTGGGAAAGGAGAGTGAGATGAGGATGGCTGGGTGCTTTCATGTGAGAGGCTCCAATGGTGACTGAAGGCCCAGGAGGAATCCTGGGGTCAGAGGCAAATCCCACAGAACCTTGGGCCAGGGCCACGGGGTGGGGTTGAGCACATGTGTTATGACTCCTTCCTGTGAAAGTAAGGTGAGCTGGCTCTGCCAGCCCAGCACCCCAGACTCTTCTCGGACTTCCCGGCTCCAGCGTGTTTGAACCAGAGGATGCCCAGCTGTTCATGGAGTCCGCCAGCCACTGATCATCACTCTGGACTCCAGGGGCTGCCACCAGCCCATGGCCCAGCATCTTTGAGGCCCATTTAAAGATAGAGCGAATGTTCGTGCCTATGTTTTTTTCTTTTCCTTTTTAAAAAAAAAAAAAAAATTTTTTTTTTTAAACTGTGTTCAGCGTGGAAACCAGGAACCAGGCTCCAATCACATTGACTGATTTTTCTGGTTCCTTTTCAG
Seq C2 exon
GAGTGAAAGCTCTTACTCTGCCTCCCCCGGAAGGTCAGGGGGCGTGAGTGCCCAGCGCGAGCTCCTTGAGGAGAGAGGGCAGGAGTACTTGAGCGCTTCTGACAAGAAGGCCCCAGCAGACTGTGACTCCCGTGTCTCCTCTCAGAGAGTAGGCCAGGAGCTTTTGTTTCCACCCCAAGAAAATGGGCAGGAAGCAGGCACTCCTGGGAGTCACACCCCAAACCTCAGGTGCTCCCCACTGGAGCCCGACTTTGCCCCCACGGAGAAAAAGCTCGAGTATGGTGACTGGGATGTGAACCACCAGTCAAAGGTTGCCAACCCAGACGCTGCGGTTGAGAAGGAGGTACCGCGGGAGGAGCCACCCTTCAGCGTCTCCTCCTGGGAGAAGGAAGGGAGCCCGAGCAAGCCGCCGGCTCTGGAGCCCGAGTGGACGCCAGAAGCCCGGGGCACTGGCAGCCAGCACCCGGAGCAGACCAGCAGGACCCGTAGGTCCGGCCCCATCAAGAAACCTGTCCTGAAGGCCCTCAAGGTGGAGGACAAGGAGAAGGAGCTCGAGAAAGTAAAGCCGGAGCTGGCAGAGGGCAGCACCCGCCTGGCCCGGGAGCCAGGGCCTGTCCATGAAGTGGCTGAGGACGAGGACCAAGAGAACGACCCCGCACTGGCCAATGCGGCCCCGGCCACCTCGGAGGACCAGGGCTTAGCCCGTGCCAGCTTGGGCCGTGAGGCCAGCCGTCCTGAGGAGGACAACAAGCCGGATGGGGCCCCGGAGGCCAGACCCTCCAGGGAGGCCAGCCACACACCCCCGACCAAGAGGAATAACTGGATCTTTATTGATGAGGAGCAAGCCTTTGGGGGCCGGGGGCCAGCCCGGGGCCGAGGCCGCGGGTTCCGAGAGTTCACCTTCCGCGGGCGGCCCACCGGTAGTGGCCTGTGTGGCGGGGGCGTCCTTGGGGCACGCGGCCTCTACAGCGGCAGCCAGAGGAGTAGCCGGGGCCGGGGGCCGCGGGAGTTTGGGCCGCCGGATGACTTCCCCCGGGCCAAGCCCCGGCGGAGGATTGCCAGTGAGACCCACAGCGAGGGCTCTGAGTATGAGGAGCTCCCCAAGCGGCGGCGGCAGCGAGGCACTGAGCCTGGGGATGAGGGTGCGCTCCCGGAGCGGGAGGAGGCCACGGGAAGGAAGGGCGACTTCAGGGAGTCCTGGCGGTCCGGCAGGATGCACCCTGAGGACCATGGTGGGCCTGAGGCCAAGAACCGAGGTCCCCGGGCCTTCGGGCGTGCCCTGCCCCCGCGTCTGAGCAACTGTGCATATGGCCGGAGAACCTTCGCGGCCAAGGAGGTGGCCCCTTGGCCCAGCCGGGGTCCTGGCGCCTCCTGGCAGGAGTCTGGCGCCTCTGACGCATGTGGAGCCCGGCGGCCCTTAGACAGAGACTACATCCCAGACGCCTACAGACGCCCCGACGCCTTGGGCTCCCGGGGCTTCGAGGATGGCCGCCTGGAGGACCGGAGGGCCTTCTTCCAAGATGACCACGCCGCAGAGTCCGAAAACGCAGAGAACCGGCCCTTCCGGCGAAGGCGGCCTCCGCGCCAGGACAAGCCGCCCCGCTTCCGGCGCCTCCGGCAGGAACGGGAGGCCCTGGGCCTGTGGGGGCCGGAGGACGAGCCACCTCTGGCAGCCGGCCAGTGGCCAGGCCGTCCTAGACCCTGCCCCGGGGACAGGAGCAGCGCCTCAGGCCGCAGGTCCCCTGAGCTCGCCTATCAGAACTCCTCCGACCACGCCAACGAGGAGTGGGAGACGGCCTCCGAGAGCAGTGACTTCAGCGAGAGGCGGGAGCGGCGGGCCGGCTCCGAGCTGGACCCCCAGGCTGATGGCAGCCCCTCTGGGGTGAGCGCAGGCGAGAAGAAGGAGCTGGCCAAGCGGAGCTTCTCGGGCCAGAGACCCCTGGTGGACAGGCAGAGCCGGAAGCTGGAGCCGGGAGGGTTTGGGGAGAAGTCTGTTAGGCCAGGTGGCGGTGACACTTCTCCCCGCTATGAGAGTCATCAGAACGGGACGCCTCTGAAAGCCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004400:ENSBTAT00000010939:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.822 A=NA C2=0.991
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCCGAAATCCAGCGACAA
R:
GTGGTTCACATCCCAGTCACC
Band lengths:
346-975
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development