GgaINT1023339 @ galGal4
Intron Retention
Gene
ENSGALG00000006348 | RAPGEF3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:HGNC Symbol;Acc:HGNC:16629]
Coordinates
chrLGE22C19W28_E50C23:436565-436874:+
Coord C1 exon
chrLGE22C19W28_E50C23:436565-436641
Coord A exon
chrLGE22C19W28_E50C23:436642-436834
Coord C2 exon
chrLGE22C19W28_E50C23:436835-436874
Length
193 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
CTTTCCTCCTCTTGGTGCAGGAT
3' ss Score
10.21
Exon sequences
Seq C1 exon
AGCCTCGCCGACCTGGCGAGCCAGGACCCTCGGCTGGGGGCCATGGTGCAGGAGCAGGAGCGGCGGCGGCCCCGAGC
Seq A exon
GTGAGTCCCATGGGCATCTCCATCCCATAATGACCCGGCGCCACCTCCGTCCGTTGGGTCCTTGTGCCCTCGGGGTGACCGCGGACGTCTCCATCCCATAATCACCCGGTGCCACCTCCATCCTTGTGCCCCCACGGGTGGCATCCCCAGCGCTGCTGCCCTCTTAACAGCGCCTTTCCTCCTCTTGGTGCAG
Seq C2 exon
GATGGAGAACGGGGACGGCAGCATTTCTCCCCAGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006348:ENSGALT00000010260:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PD(3.6=15.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]