MmuINT0131711 @ mm10
Intron Retention
Gene
ENSMUSG00000022469 | Rapgef3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:MGI Symbol;Acc:MGI:2441741]
Coordinates
chr15:97756601-97757261:-
Coord C1 exon
chr15:97757179-97757261
Coord A exon
chr15:97756641-97757178
Coord C2 exon
chr15:97756601-97756640
Length
538 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACC
5' ss Score
6.54
3' ss Seq
TCTCTCACTCTTCTCTGCAGGTT
3' ss Score
11.22
Exon sequences
Seq C1 exon
AAACTCTCAGACCTGGTGAGCAGAGATGCCCGACTTAGCAACTTGCTGAGGGAACAGTATCCAGAGAGACGGCGACACCACAG
Seq A exon
GTGACCAGTGACGAAAGCTTATCCATCCTCTTTGTGCATCCAGGCCTCCAGGCTAGACAGCTTGTCTTAGCCCGTGAGGGGTTCTTATCAGCCATTGTTCCGTTCCCACATATGCTACAGTCATCCTTTCGTTCATTCTATACATTGAATGCACTTGCGTACTTACATCTCCCCTTTGGCCAATTACTGTGGACTATGGTACCGATGTCCACTGGCCCTGTCCATCGATCAACTCCTTTGAGTTTATCTTACTTCCTCAGACATCTCTGGGGGTAGCTGGGGCAAGAGCTCACTCAGATCCCAAGAACCTGTATCTTGCTCCTGCTTCCTCCTTCCTTCTGGCCTCTGGGAAACCACAGAAGCCAATCCGGGTTTTAAACACACCTTGCCCCCTGCCCTGTGTATGTCCCTTCTCACATCCCTCTGAACTTCTGGGAAGGGCAAGATGGGATCCAGACCACTGTGGCCACTGGCCCTGAGAGTGTCCTGCCTGCCAGGGTCCTCAGTGGCTCTTTCTCTCTCTCACTCTTCTCTGCAG
Seq C2 exon
GTTGGAAAATGGCTGTGGGAACGTATCTCCTCAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022469:ENSMUST00000129223:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=NA C2=0.929
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PD(3.5=14.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types