HsaINT0137363 @ hg38
Intron Retention
Gene
ENSG00000079337 | RAPGEF3
Description
Rap guanine nucleotide exchange factor 3 [Source:HGNC Symbol;Acc:HGNC:16629]
Coordinates
chr12:47746860-47747626:-
Coord C1 exon
chr12:47747544-47747626
Coord A exon
chr12:47746900-47747543
Coord C2 exon
chr12:47746860-47746899
Length
644 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
CCCTTCTCTCTTGTCTGCAGGTT
3' ss Score
12.32
Exon sequences
Seq C1 exon
AAACTCTCAGACCTGGTGGGCAGGGACACCCGACTCAGCAACCTGCTGAGGGAGCAGTGGCCAGAGAGGCGGCGATGCCACAG
Seq A exon
GTGATGCTTTGACTCTGTTAATTTGTCATTTCCATAACTGGCAGTGCCATGGGGACCAAGAGCATACGCTCTGGAGTCAAGCACTTGGCTTCAGATCCAGGCTGCACCACTTACTTCAATTCCTTGTTCTTATCAGTCCCCTTGCTGTTCACCCTCACACCACATGTCCCTCCATTCTCATGCATCAGGCACTCATTCATTTATTCATTCTCATATCCTGAGTGCACCTGCTGTTCTCACTTCCTCCATTGGGCATGCATTTATTACCAAATACCCTCAGTGCCAGCTTCTGCCAGTCCCGCCCGGTACATTTCCTAGACTTTACCTTCACCTTTGCAGATATTCCCACGGGAGCAGCTGAGATTCAGGGGGGTTGGGAGCTCATCTGAAACAGCACTTGATCTGAAACCCTGGGTCTGCATCTGCCTTTAACTTTTTCCTTCCCCTCCTGGCCTTGGAAAATCACAAAGTCTGGGGGCCTGGTTTCAAGACCGTGTTCTCCCCTCTTTATGTGATACTTACCTGGTCGTGCTTACCTCTGAACCACTGGTGAGGGCCGGGGAGAATCCAGAGCCCCAAGGGCCTCCCTGCTGCAGCCCCAGGGATACCTGGGCTCACTCACCTCCCTTCTCTCTTGTCTGCAG
Seq C2 exon
GTTGGAGAATGGCTGTGGGAATGCATCTCCTCAGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000079337:ENST00000449771:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.303
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PD(3.6=14.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development