RnoINT0124228 @ rn6
Intron Retention
Gene
ENSRNOG00000059961 | Rapgef3
Description
Rap guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:621869]
Coordinates
chr7:139243330-139243962:-
Coord C1 exon
chr7:139243880-139243962
Coord A exon
chr7:139243370-139243879
Coord C2 exon
chr7:139243330-139243369
Length
510 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACC
5' ss Score
6.54
3' ss Seq
TCTCTCACTCTTCTCTGCAGGTT
3' ss Score
11.22
Exon sequences
Seq C1 exon
AAACTCTCAGACCTGGTGAGCAGAGATACCCGACTTAGCAACTTGCTGAGGGAACAGTATCCGGAGAGACGGCGACACCACAG
Seq A exon
GTGACCAGTGACCAGAGCTCATGGGTCCTCCTTGTGCAGCAGAGGCTGAGCTGCTGGCCCTGGTGCATCCAGGCCTCCAGGCTCTGTCCCCACATATGCTACGGTCATTCATTTGCTTGTGCTTTACATTGTGTGCCTATGTCTCCCTTTTGGCCAATTACTGTGGACTATGGTACCCAGGTCCACTGGCCCTGCCCAGCAATCAACTCCTCTGAGTTTAATCTTGCTTCCCCAGAAGCTGGGGTTCAAGGGCAAGAGCTTCTTTAGATCCCAAGAACCTGTATCTTGCTCCTGCTTCCTCCTTCCTTCTGGCCTCTAGAAACCACAGAAGCCCGTCCGGGTCTTAAGCGCACCTCACCCCGCTGCCCTGTGTACGCTCTTCCCACATCCCTCTGAACTTCTGGGTGGGGGGGCAAGATGGGATCCAGACCACTGTGGCCACTGGCCCTGAGAACACCCTACCTGCCAGGGTCCTCAGTGGCTCTCTCTCTCTCTCACTCTTCTCTGCAG
Seq C2 exon
GTTGGAGAATGGCTGTGGGAATGTATCTCCTCAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059961:ENSRNOT00000078644:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.810
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PD(3.5=14.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]