GgaINT1023505 @ galGal4
Intron Retention
Gene
ENSGALG00000004587 | RC3H1
Description
ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:HGNC:29434]
Coordinates
chr8:7324976-7332449:+
Coord C1 exon
chr8:7324976-7325341
Coord A exon
chr8:7325342-7332328
Coord C2 exon
chr8:7332329-7332449
Length
6987 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TGTATGTCATCTCTTCCCAGGTT
3' ss Score
8.83
Exon sequences
Seq C1 exon
GTTATGTTTCACACTATGTGCTGACTGTCTGTTCTTACAGAAGATATTTAAAAGCAAACAGACTTTTTTTGCAAAGATTTTGATTCCAGTGGAATCTGCTTTAGATTTTTGTCTTGTCAATTAACTCCTGAAACAATGCCTGTACAAGCTCCACAGTGGACGGATTTTCTCTCCTGTCCAATTTGCACACAGACTTTTGACGAAACGATCCGGAAGCCCATCAGCTTGGGTTGTGGCCACACTGTCTGCAAGATGTGCCTCAACAAGCTCCACCGTAAGGCGTGCCCTTTTGACCAGACCACTATCAACACAGATATTGAACTTCTTCCTGTGAACTCAGCCTTGCTGCAGCTAGTGGGTGCTCAG
Seq A exon
GTAACAGTGCTTTTTTATTACCTCTTCCTGTGTTGTCCTCTAAAAATAAAGAAGGAAAACAATTAACGATTAAAGAATGTGGCTGTGTAGACATCTCTTTGGTGATTACAGGTTTTGAGCCATGACGTGCTGTAGGCGATATGACTGTTACAGCAGTTCAGATCTTGCTTCTGCCAATCACTGACTAATTTTGTGTTTGTGATTTAGTGTAACCGTGGGCTGTCACCATAAAGGGCTGGTTCTGTTCTCTTCCTTCTTCCCTAAGTTGTATTTAGCCAGACTCTGCTGAAAGGATGAGCTGGATCAGGATCAGTGAGTTAATCTGCTGGAAAGCCATTTTCCTTTGTGAGTAGGTTACTTGCTTTATGTGGTGGACTCAATGGGCTCGTAATCAGGTGCCCCAGAAGCAGGGTGTAGAGGAGTAGAAGTGGGACAGATCCCTCTGGTAGTAACCTTTGTACTGCCTTATGTTTAATTTGAAACTGAACTCTGAAAGTGTAACTTTGTGAGCTGGCATGTTAATATAAACTCTGAAAGGTGAATGGGGGAGGCTGCCAAGATGGCCTTTCTGCTCGAAGGTTACTCAGGGGTCAGCTGAATTGTGATGACCTGTGTGAGTAGTCCTGCAGCACTGGTACTAATGGCAGCCCAAGGAAACGGGCAAGGATGTGGCCAGTGGGAAGCAAGGTCGCCCTGTTTATCGGTTGCAGCGCAGACGTAAATTAGTGTAAGCTTGCTGATTAGTTCACCAGTAATTTCTTGTGACCCGCACTTGCCAAGGCTGGACGGAACTGTGAAATAGGGACAAGCAGAAATGATCATGTCTAACTTATGAGTAAGGACAAAAATGTAGAAAGAATGCGGTTATCTTAGAGTGGTCATTGTTTTCTGTTTGCTGCTCAGCTGCCTGGATTCAGTTGAGTTGAAGAAGCAGCAGAAAATTCAGGGAATTGCACAGCTCAAGGAAAAGAGATGAATTGTATTCCAGGGGAGCTATAAAAGGGGGAAGCTAAGATGTTGCTACAATGCTTCTCGTTAGGTTCTGTGACTTAGATCCAGATGTGGTTTTGCCACTTCTGATTTTCATTTGATTTATCGAGGAGCGCGGCTTATTTCTTGTTTTCTTGCTATGTATTGGTCTAGAACTTGTATCAGAAGATTAAAAATTGATTTCTATTTCTCACTGTACTGGTGATTCATCCCACTCTGCAGAAGAAGGTAATAAGTCCCTGTGCTTCCATTTCTGTAATGTGTAGATGCTCCATCTTTGAAGAGTGTCCAAGCACTGTGAAATCTCTGGGTGATGCCATGAATATTTATCATTCTCTTCTTTCTCCCTTCCTCTTTCGTATATCCCTCCCTTCCTCTCCGGAGTTTCAGAAATAATTCCAATTGTATCCAGATATTCACACTTAAGGAAATGTTCTGCATTTGTTCAGTTGTTTTGTGTGCACTTCATGTAAAGAAGCTGTGTGATAGCTTAAATTAGAATTTCCACAAATATAAGTCCTCTGGAATGAGATGGAAAATCACCCTGCCCCCTGTTACAGGTAATGGAGAATTTAATTCTGCTTTTGCTAGCTGGCCAGCCAGAATTTCCTCATCTGTTTGTGCGTGAGGTATGAAGAATAGCGTGGTAAGTCTTTGTCTTGAGAGCCCTCTGAACTCTAGTGACATATTTCTTTGGTCTTCCTTCTTCTATCTTATATTTCACATAGAGGAGATTCATATAACCTTGTGTCATGATGTCCTTAAAAGCTGCAAATGGCAGCAAAAGAGGCTATATTCTTTTGCCTGTTGATTGCCATCCATTCCTGTACGGATGCTGCTTGCTGCATTCTGTTAACTAAACAATAATTGGTGTTCTTAGCAGGGTTTTTAGTACACACATGCTTTCCCCTTAAGATAAATACATACATTCACACAGGCCCCTGATTTCCTAGTTTCAGTGAGCACATTCCATTGCTTTAAGTGAAATGAGCATTTAATTCACTCTCCTTTCTCTTACTTTCTCTTCCCCTTCCTGGCACCTCTAGGAGTGTTTACCACCTTCTGGAGTACTATAAAATAATTGGACTACTTTTCTGTGAAGGACAGGGAAACAGTTGCTTTTTTCCTCTGGTCTCCCTAAAGTCCAGTTTGGACTTGTTTTACAAAGGGGGAAAAATAAAAACTTGGCTGAAGGAACAGAAAGAGTACAGAGGAACTATGTTAACTTTGAACTCTGTCCTTTTAAGAAGATGGGCTCTCTTTGGCATACAGCAACAGAAAAGATCTGTGAGCAGCAAAGCCAGCTTATGAAATGAGTAGCATCATCGATTTTGGTGTGAAACAAAATCCATTTTCTAGTTCCACTTCGTGGCTTAGTTTTTGTAGGCTCTAAGTCTTTAACCTCCCCCAATCTCCAGCAAACTGTACACATGAACCTGGGAAAACCAGTACTACTTTATTTTTAAACAATGAATTCCGTAAGAGAGGCTTCATTTTAGACAGAGATACAGTAGAACACAATTATAGCTTTTATCTGGGAGGAAAAAGAACAGTTTGCTCTTTTCCCTTTGGGGAAGCGTTTGGGAAGTACACACTTATAAGCGTTGTGTGCTTTTTTGCTGGAGGCAAAGAACAAGCAGTTTGAAGAAACAAATCTATTCTGCTGTGACTGGCAGCAGTGATAGCATTCCAGGACAAGTCACGTTGGCTGGCTTTCACACAGGCGCAGTGGGTGAAGTTAACAGGGAAGATGGACTGCATTTGTCACAAGGGCACCAAGAGGAGCACTGCCTATTCCTCTGGCAGCAGCATTAACTTCCTGAAGAGTTGGTTACTCTAGCGTTGAAGAGTGTTGGTTTCTTCTTGGAATTACTGCCTGTTTGTCAGTTTTGGCTCTCTCCGTTATTTTCCAGTGAGTGAAATTGTTGCTCAGTTTAAATCCATTCTTGATGTGAAAAATAACCTCTCTGCTTTCCTGCTGCAGCACGGAGCACATCAGCAGTGGGTACAGGGTGTCCTATGGGGCAGCAGCCATATGGTTCAGCACTCACACAAGTGAGGTGGGGGGAGAAGGGATGGAGGGGGGAAGGTGACAGTTACTATCCTTGAGAGAGCTGGCAATAGCTGAGCACCTCAGTAGGAGCTAAGAGAAGTGAAGAAAGAGAGACAGTGGTCTTTAGTACAAATCAAAAAGGCTTTATTAGAGCATTCATAGGACGGATTTAAAACTTTTTAAACTTCTCAGATAGAGAAGAAATCTCTTAAGCCTATTTCTAATGGAATTAAGTTTTGAATTTTAACTGCTCAAGCATCCACAGATTACTTGCTATTTTGTGGCTGCTTTAAGCGTTCACTGGGCCAGTGTTTTGAAGGTGCACAGTCACGGATCTGTCATCTCATTTCTTCCCTCCTCTTTTCTGTGGCATACCAAACAGCAGTGTTCGCATTCCAGACAGGTGGTGTCAAGTGGCAAAAGTTCCTGTGGCACTGTAATTTCTATTGTAGTCACCTGTGAATGTGATAAATACAATTCCAGACGTTAGGCAATGGAATCATGTGTATGGAGAGAGAATGTGAGAATGTCATGAAGTGATAGCCCACGAAAAAGGGGAAGGTTACTATTGCAGAGCTTATGTTGGCAGCTCACTTGATAATTTTGCTGAGATGAGGTGCCACAAGAAAGGAACTTTCTGCAAAGAAGCTATCCCTGGTGAAAGCTCATAAGGAACTGAAGACAGTAGACTGTAGTAGTGTTGGTTTGAATTTTTTGACTGTTTCTTGCTGACAGGAAGCAAGATGCACATCCGTAGGAGGATAAGAATGGGGGAAAACAGTTTTCAGGCCAGACGAACAGGGATTTGGTCCGCTCAGCGTGTTTTTGTTCTGTGCAGTTAAATGTCTGATGGTAATTAGTGACAATTCAAGCTGACATCCTTCATGAAATTACAGCTAAATCGCCACTTCCAAATCTCTGCCTGGTAAGAGATGATGATGCAGCGACACGCTTTCCTGGTTGCCCTTCTCATGCTGTCACAGCCTGCCTCTTCCCACAGCCACGCTGCCATTCTGTTGCCAGGAGGCCTGCACTCATTGCCAAGGCAGATGTACTCAAAAAGAACACAAGTTGAAAGTAATAAAGCATCTGAGCTTATTTTTCCGGTCTCGTTCTCTGTTGGGAGACGTCTGTGATATTATGTAAATGTGCTTGCAGTGAAAACTGCAAAGGGTGTGGCGTCTGAGAACATGGAATATTGAATGAGGATGAAAATCATGAACTCATTCTGCAGGGCATCTATTTTGAGGTTCTCAAGAGGCATTGTAAACAGAAGGGACTGTAACGTCCGGCATGCTCTTGAAAAGATATTTTGAGAAGGGGAAGTGAAAATGCTTTGAACTTGAGTGATTTCTCAGTTGTCCTCCAGCAACTGTTTGACAGAGCCAGAATTAACATTCAGCTCTCATGTGACTTTCATAAAGTGTGGCTGTTCTTCTTTTCTCTCGGTCAATTCTGTTCTTAAAGTCGTTACAACTACAAATGCATGGGGAGAAATGGAACTGCATATAGCAGTACCAGCAAAAGGACAAATTACTCACGAGCTGTGCTATCAGATGCTTCATCTTCAGTGGTGTTGTGTGTGTGAAAAGAGAGGCATTTTCATCTCCTGAGACTCCTGAAACCACAAAATAAGCATCTCATTTTATTGTTCCACATGATACTTGCTTGGGCTTAAGATTAACGTTGCATCTCCTTTTGAGCTGCTGTCTTGGATTTTACAGTAAAATTTCCCTTGCAAAGAGGAGAAATAGGAGTGATGTGCAGATATGCAGTGTTCAATAGCTTTGTTAACTCTTGGCAGGTTTTCCTGTGCCATCTTTCTCCTAGGAAAGGGGAAGCATTCTGTGAGCTGCCACTACAGCCCTTGTATCTGGTGGGCTGTGTTGTGCTGCATACAGCATTCCAAACGGCAGCTGTGAATGCATGCTGAGCCAACCCTGCCTGATTGCAGACTGAAATCCAGGGCTGAGCAAGACATTCGATGATTCTATGATTCCTGCCCCAGCCCGCTTCGGCAGCTGCTGCTGTGGCACTCTGCTTGCATTTCAAGTTGCTGCTGCTGGCAGATTGAATGCTTGCAAGGGTACGTGGGAGTTGTGCTGAAAATCCATTCCAGCAGTAGGTAGGGCAGAGACTGCCCTATAGGGCAGCGTCTGTCTCGGCACAAATGCATGAGATGCGTGTGCTGTTTGATCAATGAGCCAGTTCTGCTTGTGTAACTTCCCAGACAGAGGCAGGCTGCTAAAATGGCAGCAACTTTGAAAAGGAGGTGGAGTGTTCTGTGAACATGAAAGCAAATGTTGAAGGTGCTAATGTGTGTTTCCCAAAGCCCAGTAATCCAGTCCGGCTGAGGCTGCTGCAGTTGAAACAGTTATGGCTGACCTCTGTAAGGCACAGCTGCAGAATCCTCTGCTCAAAGCTTTTTTTGCTCAGAAACAGGAATAAAAAAATCATTCCCAAGTTAACTGTGATCCATGGAAAGCATCCAGGCCAGCCTTCCTGGCTTGCTGTGATTAAGCTTGTTGTTTTCCCCTGTAAGTGGTGTGGAAGTGCCAGATGCATCCTATCTTGGTGTTGTTTTGGGGATGGTATCAACTGTCCTAATTGTTGCAGCCTATATTACACTGGCAGACTTTTTTGTCACCAACTTTTGAAGCAAAAATGATGCAAGTGATGTGTGCCAGAATGAGCATCTGGCACAGCTGGTCTTCTCGGCCTGTGGAAGTGACATCCTCTAACTGGAACAGATGGCTTTCTACACAAATCAGGAAAACTCCTGCTTGTATGCATGGTGATGAACGTAAATATGTGTTTGTATATGTATTTTACTTACATTCACTGCTGCCGTTGTAATGGTACTGTGCCTGGCTGTGTTACATGTGAAGGTTGGCAGGCTCATAGCTCAAGCATTAAAGGCTTGTGCTTTTAGACTGACGGTCATGTAAGCAGCTATACAGGATTAGCATTATGTTATTGCTGGTGGGATGGGGATTGACTTGGAAATAATAGAAGTCAGAGTCCGAGGTCTGCTTGCACTTGAGTAGCATATGCAAAAAAAGCTTGCGATTAGTCTTCTGAGAAACTCCAGTTCCTGATGCTGTTGTGTATTTATTGAGCTGACTGCTGAATTGTGTTATTTATGGGCACGAATACAGTGCTCTGCTGCACCTCCAAACTTGTTTAAAGCTGTAAGAATTTAACTGGAGAAAGCAGCAACAAAAAAAATAACTTCAGGGATGAGGATCCAATATACCTTTGAAAAATGTTGGTTTCTGGTGAATACCTGGATAAAGAGATAAGTGCCATAACTAAAACATAGTAAAAACAAAACCAAGCATGGCCTGTGATGTCAGTTTAATACTTGGACTTTGTGTTCATACAAGCTGTGTGGGATAATGTCCTCTTACTGCTTGATGAATTGGGTCTGGGCAAAATACACTGCAGGAGTGGCGTAGTGTATTTGCTGCTAAGTCTTTCTCCCAGTAATCCAAGTAGCTCAGATTGCTTATCCCAGGATGACTGTAGAGCTGTGAGGCCCTGGATACGAATCTGCACTTTCCCGTAAACCGGTGTTCATCTGATCTGTTCTATATTTGGTCATCCAGCTTTGGGGATGTCTCAATATGCACACGACTTCAGCAAAGAAATTATAATTGCAAAAAATGGTGATATCTTTTGTCATGCTTCTGTTTCCTGTCAGCCACCAAATAAAAGAAATCTGATACTATAATCGTAAGTTTTCTGCATATGTTTAATCATGTTTTTAACTGGTAGCTTTTTGCAGTTTGTTTACTAAGGCTGAAAAAATTGCTAATGGAGAAAAATGCAGAAGAGAACAAAACAGGAAATGCTTGGGATTAATAAACTTAATTTGGTATTTGTAAGCATGGCTGCCAGTTATTTCTGTGCATTTGTCATAAATGTATGTCATCTCTTCCCAG
Seq C2 exon
GTTCCTGAGCAGCAGCCAATTACTATATGTAGTGGAGCTGAAGATACCAAGCATTACGAGGAGAGCAAAAAATGTGTGGAAGAATTAGCATTGTACCTCAAACCACTCAGCAGCGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004587:ENSGALT00000007298:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF052906=Baculo_IE-1=WD(100=72.7),PF0136316=FYVE=PU(97.3=92.2),PF134451=zf-RING_UBOX=WD(100=57.1)
A:
NA
C2:
PF0136316=FYVE=PD(27.0=65.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]