HsaINT0138809 @ hg38
Intron Retention
Gene
ENSG00000135870 | RC3H1
Description
ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:HGNC:29434]
Coordinates
chr1:173984499-173993072:-
Coord C1 exon
chr1:173992755-173993072
Coord A exon
chr1:173984620-173992754
Coord C2 exon
chr1:173984499-173984619
Length
8135 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TCTTTTCTTTTGGCCTCCAGGTC
3' ss Score
10.82
Exon sequences
Seq C1 exon
CTTTTTTTCAAAGATTTTGATTCCAGTGGAATCTTTGCTTTAGATTTGTGTGTGTGTTTGTGTTCGTGAATTGTAACTCCAGAAGCAATGCCTGTACAAGCTCCACAATGGACGGATTTCCTCTCCTGCCCAATTTGCACTCAGACTTTCGACGAAACAATTCGAAAGCCCATCAGTTTGGGTTGTGGCCATACTGTCTGCAAGATGTGCCTGAATAAACTCCACCGCAAGGCTTGCCCATTTGACCAGACCACTATCAATACAGACATTGAGCTCCTCCCTGTGAACTCAGCATTGCTGCAGCTCGTGGGTGCTCAG
Seq A exon
GTAGGATGGGTGACTTAATACTTTTAAATTTCTCCCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTGCGTGTTTTTCTCCTGAGAGAAACCTGTTGAATTAAAATTGGGTAACATTGCCTTCTATTTAAATAGGTATAATTCTGTTTGGTACTGTAAATCCTTTATTTCAGCATGTTAGATTTATTGTGGTAGTCCAGTGCTTTTTAGTCATAGTACAGTAACATCCATTTAATCTTGTCAGATATTCAATAAACCTAGCTATGCAGATCGCTAGAGAAACCTAAGGCCGGGTGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGGCCAAGGCGGGTGGATCATTTGAGGTCAGGTGTTTGAGACCGGCCTGGCCAACATGGTGAAATCCTGTCTCTACTACAAATACAAAAAAATGAGCTGGGTGTGGTGGTGTGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGACACGAGAATTGCTTGAACCTAGGAGGCAGAGGTTGCAGTGAGCCGAGATCGTGCTGCACTCCAGCCTGGGTGACAGAGTGAGACCCTGTCTCAAAAAAAGAAAAGAAACCTAAGAGGTAAGTCATAAGGACCTTTTTTAACATTGAGAAAACTATTGTTCATAAAACCACTGCACTTTACTCAGTAGAGAAGGTGCAGCTGCTTCAGGCAGTTTTACTCAGTAGACATTAACTGAAATGAAAGATGAGAAAGGTGACAAAAACTATAGCACAACATTTGGGAACCATTAGAACACACTTAATGCTTTATAAACCTAAAAATGGTTGGGATGGTAAATTTTGTGTTATGTATATATTATCACAATAAAAAAAATAAAATTTTCCCAAATTTTCCTTTCATCTAAAAGGAAAAAGAAAAAATAAATTAGACTTTAAAATATATAATCACCAATTTCTCCTAGGAATGTAAGTTTGACTTAACATCTGCAAATCAATTAATGTAATTCACTATATCAGTAAAAGTTGCAAAATTGCACACATATGATCATCTCAATAGACACAGAAAAAGCATTTGGCAAAATCCAATACCTTTTCATAATAAAAGCACTGAAACAACTAGGAGAAAAACTTCTTCAACCCAAAGGACATGGATGAAAAACCCACAGCTAACATACTGAATGGTGAAAGACTAGATGCTTTTTCTGTAAGATCAGGAACAAGTCAAGGATCTCCACTCTTAACTATTTCTGTTCAACATCATACAGGACCTTCTAGCTAGGGCAATTAGGCAAGTAAATGAAACCGGTGACATTCAGATAAGAAGTAAAAAATAAAAACAATCTCATTCACAGATGACATGGTCTTATATATAGAAAATGTTAAGGAATCTGCAAAGGAAAAGCTATTAGAAACAAAAAACTAGGCAGAGTTGCAGGATATAAGATGAGTATATAAGTATCAGTTGTCTGAAAAAGCAAAAGTCTTTCTAAGGTGTAAAAATGTGTTTACAGTGTTTCATAATTTCTTTCTTTCTTTTTTTCTTGCTCTGTCACCCAGGCTGGAGTACAGTGGTGTGATCTTGGCTCACTGCAATCTCTGCCTCTCAAGTTCAAGTGATTCTCATGCCTTAGCCTCCCAAGTAGCTGGGATTACAGGTGTGCACTACCATACCCAGCTAATTTTTGTATTTTTAGTCGAGACAGGGTTTCGCCATGTTGGCTATGCTGGTCTCAAGCTCCTGACCTCAAGTGATCCACCTGTCTCGACCTCCCAGAGTACTGGGAATACAGGCATGAGCCACCGTACCCAGCTAGTGTTGCATACTTTCATCCACAGTATGTTAATAACAGTTTTCTTAGGCCAGGCACAGTGGTTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCAAGACCATCCCGGCTAACACAGTGAAACCCTGTCTCTACTAAAAATACAAAAAGTTAGCTGGGCGTGGTTGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCCGAGGCAGGAGTCCCAGCTACTTGGGAGGCCGAGGCAGGAGAATGGTGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCAACAGAGTGACACTCTGTCTCAAAAAAAAAAAATAAATAATAATAATAATACTTTTCTTACACACGTAAGAAAGACTGTCTGGTACATAGGCCCTTAATAAAGACTGTTAAATAAGTAATATATATGTTGTATTTCTATACGCTGGCAATGGACAATCTGAAAATAGATCAATTTCATCTACAAGAGCATAAAAAAAATTAAGAATATATTTAACAAAAGAAATGTAAAATTAGACCGGGTGCAGTGGCTCATGCCTATAATCCCAATAGTTTGGGAGGCCGAGGCTAGCAGATCTCTTGAGGCCAGGAGTTCCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACCAAAAAAATAGAAAAATTAGCCAGGTGTGAAGGTGCCCACCTGTAATCCCAGCTACTCGGGGCTGAGGCATGAGACTCGCTTGAACCCAGGAGAGGGAGGTTGCAGTGAGCTAAAATCACACCACTGCACTCCAACCTGGGTGACAGAGCGACTCTGTCAAAAAAAAAAAAAATGTAAAACTATATTTTGAAGACTACAAATCGTTGTTTAAAAGTAGCTTAAAACTTGAATAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAATCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAACTTGAATAAACATTTACTCTATTAACTCAAAATGGATCAAAGGCTAAATATAAGAACTAAAACTACAAAACTCTTAGAAGAAAATATAGACATAAGTCTTTCTGACCATGGAGTAGGCAGTGGGTTTTTTTCAAGATGTGACACCAAAAAGCACAAGGAACAAAAGAAAAAGATAAGTTGAACATCAAAATTAAAAACTATATTTCAAAGATACGAACAATTGGCTGTTCACAGTGGCTCACGTCTGTAATCCCAGCACTGTGGGAGGCCAAGATGGATGGATCATTTGAGACCAGCCTAGGCAACATGGCAAAACCCCATCTCTACAGAAAATACAAAAAAAAATTTTTTGCTGGGTGTGGTGGCACATGCTTGTAGTCCCACCTGTCTGTGAGGCTGAGGTGGGAGCATCACCTGAGCCCAGGAGGCCAAGATGGATGGATCATTTGAGACCAGCCTAAGCAACATGGCAAAACCCCATCTCTACAGAAAATAACAACAACAACAAAAAATTGCTGGGTGTGATGGCACATGCCTGTATTCCCACCTATCTGTGAGGCTGAGGTGGCAGCATCATCTGAGCCTGATCACCTGATGGAGGCTGCAGTGAGCCTCGATCGCAGCACTACGCTGTAGCTTGGGCAACAGAATGAGACCCTATCTCAAAAACAATAGCAACAACAAAAAACAAAGATACCAACAAGAAAGCAAAAAGAACAACCTACAGAATGTGAGAAAACAATTGTAAAATCCTATTTCTGATAAAGACTTATATGTAGAATATATAAGGAACTCTTACAACTCAGTGATAAAAAGACAACCCAGTTTTTAAAATGGACAAAGAGCTGAACAATCACCTCGTCAAGTAGATTATACAGTTGGAAAATTGGCAAAATGAAAAGTAGCTCAGCAGTTTGTCTTTAAGTAATTGCAAATTAAAACAAGTGAGATACCACTACACACAAATTAAAATGGCCAAAATCCAAAACATTAGCAACACCAAATGCTGGTGAGGATATGGAGCAACAAAAACTCTCATCTTTTTGGAAATGAAAAATGGTATAGCTACTTTGGAAGACAGTTTGGCAGTTTCTTTATAAGCTTAACATAGTAGGTATTTACCCAGTTAACTTGAAAATTTATGTCTACACAGAAACCCTCACATGACTATTTATAACAGCTTTATTCATGATTGCCAAAAAATGGAAGCAGTTGAGATATCTTTTAATAGGTGAATGGATAAACAGTGGTATATCCATACAATGGCACATTGTATAAAATGAAATAATGAAAAGACATAGCTGTCAAGTCACAAAAAGACATAGATATATCTCAATGTATACCATTGCTAAGTGAAAGATACCAGTATGAAAAGGCCACATACTGTATGATTCCAATTATGTGATATCTGTAAAAGGTAAAACCATAGCAACAATAAAAGTATCAGTGGTTGCCATGGATTCAGGAGTAGGGAGGGAGGATAGAATTGGTGAAACAGTATTTCTTAGGGCAGTAAAACAGTTCTTTATGATTCTGTAATTGTGGCTATATGACACTCTGAATTTGTCAAAAACTGTAGAACTTTACAAAGATTATGGAAGACAATCTGAAGTATATGAAACAATTTCACTAAAGGGGTGTAGGAGAAAGGTAGATTGTGTAAGATTAAAGATAGAGAAAGATATTATCTATAAGCAGTGTACTCTAGTCTTTTCCCATGGGGGTACGAATTAATTCTGATACTGCTGTATGTATAATACATATTAGAATTGAACAGTTAAGTAAGTGAATGGGAAATGATTGGAGCCAGTTAACAGATAAACAAGGAGGAAGAGGTTAGAGTGATTCATGTGATAATGGATTGGAGTTGGAGGCATCAGTATGAACTCATTTTTAGCTTGATATGGATACAGATGGTTATATACAGAAATAGATATACGAGATATCTCGTGTGTATCTCGGGTTATTACAATGTATATCTCGGGTTATTACAGTGACATATTTCCTTGGTCTGTCATCTAAGATGGCCTAGAAGGAACAACACCCCAATAGTAATGTGCATACATAGCATTCATATCTTGGTTTCTAATACCATTCTCCAATAAAAGGAACCAGAGTTCCTTGGAGAAATGGCTAATTCTAAGACTGGGACAGGAAATACACGAAATGAGTCTGGAGTAGCTTGTAGCACTGGAAAGTATAGAGAAGTATTCAAAACACACACAGACACATACACAGAGTAATGGGGGCTATATCAAAGGCACACAGGAGCCAACTGAAAGAGCTCTCAATGGCCAAAGCTAAAACAGTTTGAACAACAAAATAAATGGAATTGGATCATAACCCAGGTATAAGATAAATATCCTTGAGTCTACACGATACAATTAAATGATTGAATAAATAGATGGAAGAAAGAAACAAATCTCCCGTGCAGAATTCCAAATTAATTACATAGATATTCTGCTCTCAAGGATGTAGAATGTGTGTGGGCTACGCATAGTGACTCCTTCCAAAAAGTACAGTTTGTGGAGATTATGTAACTTTATAGTGGAGAAACCTGGTAAACACTGACTAAACCAGCTGTTCAAATTTAACATCAGCAATAATAAGTTGTGTTGGTGGTGTGTAGCTTTGATATGATGTGATAAAAAATGGCACTTTTCCCCTATGATCTTCCAAAAATCCATAACCCCAATATACTCATGAGAAAAATGACAGATCCTAGATCCCAGTTTAGGGGCATTCTACAACATACCAGACCAGTGCTCCTCAAAACTGTCAAGGTCATTAAAACAAGGAAAGTCTGAGAAAGTGTCCAAGCCAAGAGGAGCTTAAAGAGATATTGAAGGGCTAGCGCAGTGGCTCACACCTGTAATCCCAGCGCTTTGAGAGGCCAAGGCAGGCAGATCACTTGAGGCCAGGAGTTGGAGACCAGCCTGGCCAACACAGTGAAATCCTGTCTCTACTAAAAATACACAGAATCAGCCAGGCGTGGTGGCGCATGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCATGAGAATCTCTTGAACCTGGGAGGTGGAAGTTGCAGTGAGCCGAGATTGTGCCACTGTACTCCAATCTGGGCGACAGAGTGAGACTTTGTCTCAACTTTGAAAAAAAAAAGAGGGAGAGACATGGAGGGAGAGAGGGAGGCCAAGGTGGGTGGATGGCTTGAGCCCAGGAATTCGAGGCCAGTCTGGGCAATGTAGTGGGACCTCCATCTCTACAATAAAATACAAAATTAGCTGGGTGTGGTGGCGTGAGCCCAGATGCTGCCACGGCACTCCAGCCTGAGTGACAGAGCGAGACTCTTTCTCTGAAGACTAAGTGTAATATGGTATCCTGGATGGGATCCTGAAACTGAGAAAGAACATTAGGTGAAAACTAATATCTGATTAACATGGATTTTAGTTGTTAATTATGAATATGTTGATATTGGCTCATTAATTTTAACAAATGTACCATACCAGTGTAAGATGTTAATAATAGGGGAAATTGTTAGTCGAGTGTGGTGGCTTGCTCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGAAGAATCGCTGGAACCCAGGAGGCGGAGGTTGCAGTGAGCCGAGATGGTGCCACTGCACTCCAGCCTGGGTGACAGAGGGAGACTCCGTCTCAAAAATAATAATAATAATAATAGGGGAAACTGAATACAGGATAATGAGAATTCTGTGTACTATCTTTGCCATTTTTCTGTAAATCTAAAACTGTTCTACAAAATAAAGTTTACTAGGCAAAATGGGCAAAGGATCTGAATAGATATTCTTCCAGAGAAGATATACAAATGGATAATAAGCATATGAAAGGATGGTCAACATCATTAGCTATCAGGGAAATACAAATCAAAACCACAGGGAAGTGGGAGGAAGGTAGATGGGAAGAAGAGATAATTATCAAAGAATACAAAGCTTCAGTTAGACTGGAGGAATGCCTTTAGTGATCTATTGCACAGAACAGTGACTATAAATAGTAATACATTGTATGTTTCAAAATTGCTAAAAGAGTAGATTTTATTTAAAATCTACAAAAAAAAAGTGAGGTGATGGATTTGTTAATTAACCTGATTTAGTCATCTCACATCGTCACATTGTACCCCATAAGTATATGCAATTATTATTAATTTAAAATAAAATTTAGACAAACCACAATGAATTACTACTTTTCACCCAACAGGATAGCTATAATAAAAAAAGATAATGAGTAGAAGAATTATCTTTCTACATAAAATGTAGAAGAATTGGAACCCTTATACACTCCTGGTAGATATATAAAATGCTACTCTGCTTTTGGAAAATAGTTTGGCAGTTTTTCAAAAGGTTAAATACAGACTCCTAGGTATATACCAAAGAGAAACAAAAACTTTTGTCTACACAAAAACTTGTACACAGATGTTCATAGCAGCATTATTCGTAGTAGTCAAAAATAGAAACAACCTATATGTCTGTCAATGATGATTGTGTAAATAAAGTGTGATATATTTATACAATGGAATTTTATTCAGTGATGAAAATGAATGAAGTACTGATACAACCTGGAAGACCCTTGAACACATTGTTAAGTGAAAGAAGTAAGTCAGAAAAGACTATTTATTGTATTGATTTTGCTTATATGAAATGTCCAGAATAGGCAAATCCATAGAAAATAGATTCGTCTTTCCAAAGGTTGGTGGATGGTTGGGAAGAAATAAGGGGTAATTGTTAAAAGGGTACTGTGTTTCTTTTTGGGGTAATGAAAAGGTTCTAAAGTTGATTGTGGTTATGTTTGGACAACTGTGAATATACTGAAAACCAGGGAATTGTATGTACTTTAAACCAGTCAGTTGTATGGTATGTCGATTATATCTTAATTAGGCTGTTAGAGAAACAAAACAAAGGAATGCAAAGATACATGTTAATAGGAAAGATCTTTTGAAAGAATTCAGTAAATTTAGTGGGCGTTTTGATGTTACCAGTGTCAGCATTATGAGTGCATAAACTATACTAAATAAAACAATTAATGAATTGAGCACTCATACAGATCTTTTCTTTTGGCCTCCAG
Seq C2 exon
GTCCCTGAGCAGCAGCCTATTACTTTGTGTAGTGGGGTTGAAGACACAAAGCATTATGAGGAAGCCAAGAAATGTGTAGAAGAATTAGCATTGTACTTAAAACCGCTCAGCAGTGCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135870:ENST00000367694:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF052906=Baculo_IE-1=WD(100=72.7),PF0136316=FYVE=WD(100=81.8),PF134451=zf-RING_UBOX=WD(100=57.1)
A:
NA
C2:
PF0136316=FYVE=PD(27.0=65.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development