GgaINT1024404 @ galGal4
Intron Retention
Gene
ENSGALG00000014179 | SBK1
Description
SH3 domain binding kinase 1 [Source:HGNC Symbol;Acc:HGNC:17699]
Coordinates
chr14:12940091-12940584:-
Coord C1 exon
chr14:12940382-12940584
Coord A exon
chr14:12940294-12940381
Coord C2 exon
chr14:12940091-12940293
Length
88 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CAGCCCTCTGCCCGCTGCAGGCA
3' ss Score
5.73
Exon sequences
Seq C1 exon
CACAGCCATGAGTGCCGGATCGATCGAGCAGGAGCCGTCGCGCAAGCTGGCGTGCTGCGGGGTGCCGCTCATCACCGAAGACATGCAGTCGTTGGCCATCCGCACCCTCTCGGGCACCGACATCAACAAACACTACGACCTCATCCGCGAGCTCGGCAAGGGCACCTACGGCAAGGTGGACCTGGTGTCCCACAAAAGCACAG
Seq A exon
GTGAGGGGAGCGGGGGGCAGGCGCGGCACCTGGGTGTGCATCGCCATCGGCCTTGCCAGGGGCTCAGCCAGCCCTCTGCCCGCTGCAG
Seq C2 exon
GCACCAAGATGGCCCTGAAGTTCGTCAACAAGAGCAAGACGAAGCTGAAGAACTTCCTGCGGGAGTTCAGCATCACCAACACGCTCTCCTCCAGCCCCTTCATCATCAAGGTCTTCGACGTGGTCTTCGAGACAGAGGACTGCTACGTCTTTGCTCAGGAGTACGCCCCAGGAGGGGACCTCTTCGACATCATCCCCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014179:ENSGALT00000022935:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(8.8=34.8)
A:
NA
C2:
PF0006920=Pkinase=FE(25.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCATCACCGAAGACATGCA
R:
TTGTTGACGAACTTCAGGGCC
Band lengths:
168-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]