GgaINT1024588 @ galGal4
Intron Retention
Gene
ENSGALG00000011945 | SCRN2
Description
secernin 2 [Source:HGNC Symbol;Acc:HGNC:30381]
Coordinates
chr27:3894686-3895142:+
Coord C1 exon
chr27:3894686-3894867
Coord A exon
chr27:3894868-3894942
Coord C2 exon
chr27:3894943-3895142
Length
75 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CGGGTGCTGCCGTGCTGCAGGCT
3' ss Score
6.58
Exon sequences
Seq C1 exon
TGCACCTACATCGAGATCGAGCAGGCGGAACGGACCCACGCGGTGGTGCTGAGCCGTCCCGCCTGGCTGTGGGGCGCCGAGATGGGTGCCAACGAGCACGGGGTCTGCGTGGGCAATGAGGGCGTTTGGACCCGGGAGCCTGTCGGGGAGGGTGAGGCGCTGCTGGGCATGGATTTGGTGAG
Seq A exon
GTGAGGAGCAGCCCTGCCGTCACCCCACAGCTCCCGTGGGGCGCAGGCGGCCGAGCGGGTGCTGCCGTGCTGCAG
Seq C2 exon
GCTGGGCTTGGAGAGGGGCGGCTCTGCCAGGGAAGCGCTGGAGGTGATCACGGCGCTGCTGGAGCAGCACGGGCAGGGTGGGAGCTGCAAGGAGGAGCCGATACCCTTTGTGTACCACAACACCTTCCTGCTGGCTGACCGCCACGAGGCCTGGGTGCTGGAGACGGCCGGCCGCTACTGGGCAGCCCAACGGATCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011945:ENSGALT00000019483:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PU(25.1=88.5)
A:
NA
C2:
PF0357710=Peptidase_C69=FE(31.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAATGAGGGCGTTTGGA
R:
AAGGGTATCGGCTCCTCCTTG
Band lengths:
179-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]