HsaINT0146142 @ hg19
Intron Retention
Gene
ENSG00000141295 | SCRN2
Description
secernin 2 [Source:HGNC Symbol;Acc:30381]
Coordinates
chr17:45916810-45917738:-
Coord C1 exon
chr17:45917557-45917738
Coord A exon
chr17:45917010-45917556
Coord C2 exon
chr17:45916810-45917009
Length
547 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
3' ss Seq
TTGGCCCTCTCTTTTGCCAGGCT
3' ss Score
8.01
Exon sequences
Seq C1 exon
TGCACCTACATTGAAGTGGAACAGGTGTCGAAGACGCACGCTGTGATTCTGAGCCGTCCTTCTTGGCTATGGGGGGCTGAGATGGGCGCCAACGAGCATGGTGTCTGCATTGGCAACGAGGCTGTGTGGACGAAGGAGCCAGTTGGGGAGGGGGAAGCCCTGCTGGGCATGGACCTACTCAG
Seq A exon
GTGCAGACCCTGCCCTTCCTCATCTGCCTGACACACCAGAAATCTAGGGGCTGAGTTTTGACCTGGGCCCATCCATCCCTCCCCCAGCCTGGTTCACAGGGGCCTCCTCCTCTCTGCAGACTTTGCCCTTGTGCCTTCGTGAAGAAGGCTGCAGCAGCAGCCACCTTTGGGCCTCTCCTGGCCCAGAAATAGAGCAGTGGTTATTTATTTATTTTCAGTTGAAATCTTACATAGAGTCCCAATTTATAAAACCAGTAATAGTGGATGGAGCAGCTCTGGGTGGAGAGAGGTTAGGGGCTCAGGACACTTCTCTCTCTGAAACTGTGTTTCAGGCCTTTTCATGGAACCCTCAAAGCATAGCACATGGAACCAGAGCATTGAAAGCCACTGGCATAATTGCATTTGATACGATCAGTGCCAGCAGATTTGCTGTGTGACTTGGGCCTATCACCAAACCTCTCCGGGCCTCTTCTGTCCCCTGGAGCTTCTGCCACCAGCCATTGATCCCTCTGTCACCCTTCTGTCCCTTGGCCCTCTCTTTTGCCAG
Seq C2 exon
GCTGGCTTTGGAACGGAGCAGCTCTGCCCAGGAGGCCTTGCATGTGATCACAGGGTTACTGGAGCACTATGGGCAGGGGGGCAACTGCCTGGAGGATGCTGCGCCATTCTCCTACCATAGCACCTTCCTGCTGGCTGACCGCACTGAGGCGTGGGTGCTGGAGACAGCTGGGAGGCTCTGGGCTGCACAGAGGATCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141295-SCRN2:NM_001145023:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(25.4=100)
A:
NA
C2:
PF0357710=Peptidase_C69=PU(34.5=76.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACGCACGCTGTGATTCT
R:
GATCCTCTGTGCAGCCCAGAG
Band lengths:
349-896
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)