RnoINT0131861 @ rn6
Intron Retention
Gene
ENSRNOG00000010214 | Scrn2
Description
secernin 2 [Source:RGD Symbol;Acc:1307741]
Coordinates
chr10:84968103-84969359:+
Coord C1 exon
chr10:84968103-84968284
Coord A exon
chr10:84968285-84969159
Coord C2 exon
chr10:84969160-84969359
Length
875 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TGCTCTGACTTTTCTGTCAGGCT
3' ss Score
7.28
Exon sequences
Seq C1 exon
TGCACCTACATCGAGGTGGAACAGGTGTGGAAGACGCATGCTGTCATTCTGAGCCGCCCTTCTTGGCTGTGGGGGGCTGAGATGGGTGCCAATGAGCTTGGTGTCTGCATAGGCAACGAAGCGGTGTGGACCAAAGAACCCGTAGGGGAGGGGGAAGCCCTGCTGGGTATGGATCTACTCAG
Seq A exon
GTAAGGACCTGCTTGCTCTTCAGTGCTCCACTCCCTCCCACCTAACCCCTGAGTCTATTGGGCTTGTCTCCCTTGGCCTTGCCTTCCTGGTCTTCCTAAGGAGACTACAGTCATATCTTCACAGAACCTCCCTTGGCCTACAGTGCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTAAGTACTTTTTTGTTTGTTTTGTTTTGAGACAAGGTTTCTCTGGGTAGCCTTGGCTGTCCAGGAACTTGCTCTGTAGATTAGGCTGGCCTTGAACTCACAGAGATCCTCCTGCCTGTGTGCCAACACTTGGGACTCAGTACTATTTTTGTTGACTGAAATATTCTATAGTTCTGGTTTATAAGAACTGATAAACACCGGGCAGCTCTGCCTGAGGAGAGGTTCAGGCACTTCTTCCTTGGAGAGTGTTCCAGATCTTTCCATAGAACTCTCAGTTCAAAGCTGGGCAAACATATGGCTTTATTATTGTTTTCGTGTTTGTTTTTGTTTTATGTTTTGAGACAGGGTCTCACAGCATAACTCTGACTGACTTAGAATTTACTATCTAGACCAGGCTGGCCTCAAACTCACAGAGATCTGCCTGCCTCCTGAGTGCTGGGGTTAAAAGTGTGTACCACTACTCTGATTTTTCACTTTGCTTTGGTATTTTTGTCTGCTTGTTTTAATATAAGAAATCACGTAGTATGTAGCTGAGTCTAGAGACGAACTTCTGCTCTTCTTGCCTCCACCCCTTTGGTGGAGTCACAGGCCTGGCCTGTGTGACTGTTTAATGGCATCATTGCAGCTGGGTTGGCTGTGTCACACGGGCTTCTCATCACACCTGTGTGGCTCACTTCTGTGCTCTGACTTTTCTGTCAG
Seq C2 exon
GCTGGCTTTGGAACGGAGCAGTACTGCCCAGGCGGCTGTGCACGTGATTGCGGGCTTGCTGGACCGCTATGGGCAGGGAGGCAGCTGCCGGGAGGATCCGGAGCCTTTCTGCTATCACAACACCTTTTTACTGGCTGATCGGACAGAGGCGTGGGTGCTGGAGACAGCTGGGAGGCTGTGGGCTGCTCAGCGGATCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010214:ENSRNOT00000013580:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PU(19.0=59.0)
A:
NA
C2:
PF0357710=Peptidase_C69=FE(35.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGAACAGGTGTGGAAGA
R:
GCCTCCCAGCTGTCTCCA
Band lengths:
345-1220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]