HsaINT0146142 @ hg38
Intron Retention
Gene
ENSG00000141295 | SCRN2
Description
secernin 2 [Source:HGNC Symbol;Acc:HGNC:30381]
Coordinates
chr17:47839444-47840372:-
Coord C1 exon
chr17:47840191-47840372
Coord A exon
chr17:47839644-47840190
Coord C2 exon
chr17:47839444-47839643
Length
547 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
3' ss Seq
TTGGCCCTCTCTTTTGCCAGGCT
3' ss Score
8.01
Exon sequences
Seq C1 exon
TGCACCTACATTGAAGTGGAACAGGTGTCGAAGACGCACGCTGTGATTCTGAGCCGTCCTTCTTGGCTATGGGGGGCTGAGATGGGCGCCAACGAGCATGGTGTCTGCATTGGCAACGAGGCTGTGTGGACGAAGGAGCCAGTTGGGGAGGGGGAAGCCCTGCTGGGCATGGACCTACTCAG
Seq A exon
GTGCAGACCCTGCCCTTCCTCATCTGCCTGACACACCAGAAATCTAGGGGCTGAGTTTTGACCTGGGCCCATCCATCCCTCCCCCAGCCTGGTTCACAGGGGCCTCCTCCTCTCTGCAGACTTTGCCCTTGTGCCTTCGTGAAGAAGGCTGCAGCAGCAGCCACCTTTGGGCCTCTCCTGGCCCAGAAATAGAGCAGTGGTTATTTATTTATTTTCAGTTGAAATCTTACATAGAGTCCCAATTTATAAAACCAGTAATAGTGGATGGAGCAGCTCTGGGTGGAGAGAGGTTAGGGGCTCAGGACACTTCTCTCTCTGAAACTGTGTTTCAGGCCTTTTCATGGAACCCTCAAAGCATAGCACATGGAACCAGAGCATTGAAAGCCACTGGCATAATTGCATTTGATACGATCAGTGCCAGCAGATTTGCTGTGTGACTTGGGCCTATCACCAAACCTCTCCGGGCCTCTTCTGTCCCCTGGAGCTTCTGCCACCAGCCATTGATCCCTCTGTCACCCTTCTGTCCCTTGGCCCTCTCTTTTGCCAG
Seq C2 exon
GCTGGCTTTGGAACGGAGCAGCTCTGCCCAGGAGGCCTTGCATGTGATCACAGGGTTACTGGAGCACTATGGGCAGGGGGGCAACTGCCTGGAGGATGCTGCGCCATTCTCCTACCATAGCACCTTCCTGCTGGCTGACCGCACTGAGGCGTGGGTGCTGGAGACAGCTGGGAGGCTCTGGGCTGCACAGAGGATCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141295:ENST00000290216:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(25.4=100)
A:
NA
C2:
PF0357710=Peptidase_C69=FE(28.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACGCACGCTGTGATTCT
R:
GATCCTCTGTGCAGCCCAGAG
Band lengths:
349-896
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development