GgaINT1024894 @ galGal4
Intron Retention
Gene
ENSGALG00000026431 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:5912990-5913448:-
Coord C1 exon
chr19:5913252-5913448
Coord A exon
chr19:5913185-5913251
Coord C2 exon
chr19:5912990-5913184
Length
67 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
ACCCCCTGCCGTCCCTGCAGAGG
3' ss Score
10.62
Exon sequences
Seq C1 exon
GCTGCGGCTGGGTGCAGGGGACGTCCTCACCTTCTATGACGGGGATGACCTGACAGCACGCATCCTGGGCCAGTACACGGGTGCCCGTGGCCGCTTCAAGCTCTTCGCCTCCAGTGCCGATGTCACCATCCAGTTTCAATCTGACCCCGGTGCCGGCGTCTTTGCCTATCGGCAGGGATTTGTCATCCACTTCTCCG
Seq A exon
GTGAGCCCCACGGCTGGGACGGGTGCCGTCACTCCCATGGCCCGCTCACCCCCTGCCGTCCCTGCAG
Seq C2 exon
AGGTGCCCCGCAACGACACGTGCCCTGAGCTGCCTGACATCGCCAACGGCTGGAAGACCGCCTCGCAGCCTGAGCTGCTGCACGGCACCGTCGTCACCTTCCACTGCTACCCCGGCTTCGAGCTGGCTGGTGCCGACCTGCTCATGTGCCACTGGGACCTGACGTGGAGCGGCGACCTGCCATCATGCGAGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026431:ENSGALT00000046159:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(58.7=95.5)
A:
NA
C2:
PF0008415=Sushi=WD(100=84.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTTTCAATCTGACCCCGG
R:
GTAGCAGTGGAAGGTGACGAC
Band lengths:
178-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]