BtaINT0131707 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015979 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:20882059-20882996:-
Coord C1 exon
chr19:20882800-20882996
Coord A exon
chr19:20882254-20882799
Coord C2 exon
chr19:20882059-20882253
Length
546 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
CTGCATCTTGCTGCCCCCAGAGG
3' ss Score
8.19
Exon sequences
Seq C1 exon
GCTGCGCATAGGCACGGGTGACGTGCTAACCTTCTATGACGGGGACGACCTGACAGCTCGGGTCCTGGGCCAGTACTCTGGGCCCCGTGGCCACTTCAAGCTCTTTACCTCCATGGCTGATGTCACCATTCAGTTCCAGTCTGACCCCGGGGCCTCAGTGCTCGGGTACCAGCAGGGCTTCGTCATCCACTTCTTTG
Seq A exon
GTGAGCTTGCCCCTGCCCTGCCCTGCTGGGGTGGGGGGCGGGTAGAAGCGACGCCAGGTGCAGACCCCCAGCCTAGGCAAGTCAGAAAGGCCAGGGAGGTGAGGAGTCTGAGCACTCTTATCTGATTGGGGGAAGCTGGAAGCTGGGACATTCCAGGCATCACCTTTGGGAAGTTAATCTTATTCTCCATCTCCCCTGAGGGCCCAGTGAGAGGAAGCAAGCCTCTGCTAAACGGAATTGGGTAGACAGGGAACTGAGGAAAGGCCTTCATTGAAGTGACAGTTTTCCCCACCCTACCCGGCCCCTCTCTCAGGGCTAAGGAATTGGCCAACGCACTTGGGAAGTAAGGACAAAGCTTAGGTGACAACCCTGGAATCTAGGAGACAGGCAAGAAGGAATCCCTGAGCAGGAAGGCATGATCGCTGAGCCTGCCCAGGCCAGGCCAGGCGTGGATGAATTAGCAGGAACTGGAGTGCCCTCGAGGGGAGGGAAGCTAGCACAGTCTTCCTTGGGTGCTGCTGAGGGCCTGCATCTTGCTGCCCCCAG
Seq C2 exon
AGGTGCCCCGTAATGACACCTGTCCGGAGCTACCTGAAATCCCCAATGGCTGGAAGAGCCCGTCGCAGCCTGAGCTGGTGCATGGCACCGTCGTCACCTACCAGTGCTACCCTGGCTACCAGGTGGTAGGCTCCAGTGTCCTCATGTGCCAGTGGGACCTCACCTGGAGTGAGGACCTGCCCTCATGCCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015979:ENSBTAT00000021257:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.121
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(58.7=95.5)
A:
NA
C2:
PF0008415=Sushi=WD(100=84.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGTGACGTGCTAACCTTC
R:
CTCCAGGTGAGGTCCCACTG
Band lengths:
352-898
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]