RnoINT0133907 @ rn6
Intron Retention
Gene
ENSRNOG00000009350 | Sez6
Description
seizure related 6 homolog [Source:RGD Symbol;Acc:619780]
Coordinates
chr10:64869272-64870266:-
Coord C1 exon
chr10:64870070-64870266
Coord A exon
chr10:64869467-64870069
Coord C2 exon
chr10:64869272-64869466
Length
603 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
CCCTGCTTCTGTGTCTCCAGAGG
3' ss Score
8.81
Exon sequences
Seq C1 exon
GCTGCGCATAGGCTCTGGGGATGTACTGACCTTCTACGATGGGGATGACCTGACAGCCCGGGTCCTGGGCCAATACTCAGGGCCCCGTGGCCACTTCAAGCTCTTTACCTCCATGGCTGATGTCACCATTCAGTTCCAGTCAGACCCTGGGACGTCGGCGCTGGGTTACCAGCAAGGATTTGTCATCCACTTCTTTG
Seq A exon
GTGAGCTTGTGCTTTCTGACTTGGATTGTAGACCCTAAATCATGACAAGACAAACGGTGCAGGACAATGAGGAGGAGTCTGGATGCCGTCAGGCACGGGGAATCTGAGAAGGCGCCATGTATCACCAGGAGTATTTGGTTAGAGCAAGAAAGCTCTAGGGAGGAAGTGTAGAGGGACTTCCTAAAACAAAACAAAACAAAACAAAAAACAAAAATAAAAACAAAAAACAAAAATAAAAACAATACAAAACAAAAAAAAAAAAAAGGGGGAACTACAGAAAAGTGTCGGTGCCTGCCTGCCTTTCCACCGGTCTTGAACAGAAATGATTTCCCTCATCCTGTTTTGCTCATCTCAAAGGCCTGAGGAAGTGACAAGTGATTCTGAAGTAGAGCCAAAGCCAAGATGACAATCCTGGAACCTTGGAGATTGGGGGTGGAGACTGGGGGAAGAGCATGGGGGTGGGGCCTGAGAAGAGATGATGGCCTCTCCAGGCCAGTCTAGGTCCAGGATAATCTACAAGAACCAAAGGAACCTTAGGGTCGGCACTAGCAGTCGCTTTGGTGCTGGCCAAGAAGCTGCATCTCCCTGCTTCTGTGTCTCCAG
Seq C2 exon
AGGTGCCCCGCAATGACACATGTCCAGAGCTTCCCGAGATCCCCAACGGCTGGAAGAACCCATCACAGCCTGAGCTGGTGCATGGCACGGTGGTCACCTATCAGTGCTACCCCGGTTACCAGGTGGTGGGATCCAGTATTCTCATGTGCCAGTGGGACCTGAGCTGGAGTGAGGACCTGCCCTCATGCCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009350:ENSRNOT00000048543:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.121
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(58.3=94.0)
A:
NA
C2:
PF0008415=Sushi=WD(100=84.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGGGGATGTACTGACCT
R:
GTCCCACTGGCACATGAGAAT
Band lengths:
344-947
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]