MmuINT0142265 @ mm10
Intron Retention
Gene
ENSMUSG00000000632 | Sez6
Description
seizure related gene 6 [Source:MGI Symbol;Acc:MGI:104745]
Coordinates
chr11:77974440-77975340:+
Coord C1 exon
chr11:77974440-77974636
Coord A exon
chr11:77974637-77975145
Coord C2 exon
chr11:77975146-77975340
Length
509 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
CCCTGCTTCTGTGTCTCCAGAGG
3' ss Score
8.81
Exon sequences
Seq C1 exon
GCTGCGCATAGGCTCTGGGGATGTACTGACCTTCTACGATGGGGATGACCTCACAGCCCGGGTCCTGGGCCAATACTCAGGGCCCCGTGGCCACTTCAAGCTCTTTACCTCCATGGCCGATGTCACCATCCAGTTCCAGTCAGACCCTGGGACCTCGGCGCTGGGTTACCAGCAAGGATTTGTCATCCACTTCTTTG
Seq A exon
GTGAGCTTGTGCTTTCTGATTCGGATTGTAGACCCCCAAATCATGACTAGTCAAACGGTGCAAGACAATAGGGAGTCTGGATGCCCTGTCAGACACGGGGAACCTGGGAAGGTGCCATGTATCACCAGGAGACTTTGGTTAGAGCAAGAAGCTCTAGGGAGGCAGAGAGGACTTCCTTAAAAAAAAAAGTGTCGCTGCTTTCCTTTCTGCTGGTCTTTCCCTCATCCTGCTTTGCCCATCTCTCAGGCCTGAGGAACTGGCCAAGTGCTTCTGAGAGTAGAGCCAAAGCCGAGATGACAACCCTGGAACCTTGGTGATGGGTGTGTGGGGGTGTGTGTGGAGACTTGGGGTCTGGGGTGTGGGGCTTGAGAAGAGAGGATGAGTCGCTAAGCCTCTCTAGGCCAGTCTAGGTCCAAGATAACCTACCAAAAGAACCTCAGGGTTGGCACTAGCAGTCACTTTGATGCTGGCTGAGGAGGGGCTCCATGTCCCTGCTTCTGTGTCTCCAG
Seq C2 exon
AGGTTCCCCGCAACGACACATGTCCAGAGCTACCCGAGATCCCCAACGGCTGGAAGAACCCATCACAGCCTGAGCTGGTGCACGGCACGGTGGTCACCTATCAGTGCTACCCTGGTTACCAGGTGGTGGGATCCAGTATTCTCATGTGCCAGTGGGACCTAAGCTGGAGTGAGGACCTGCCTTCATGCCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000632:ENSMUST00000093995:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.121
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(58.3=94.0)
A:
NA
C2:
PF0008415=Sushi=WD(100=84.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGGGGATGTACTGACCT
R:
TTAGGTCCCACTGGCACATGA
Band lengths:
348-857
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types