GgaINT1024896 @ galGal4
Intron Retention
Gene
ENSGALG00000026431 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:5912440-5912907:-
Coord C1 exon
chr19:5912716-5912907
Coord A exon
chr19:5912638-5912715
Coord C2 exon
chr19:5912440-5912637
Length
78 bp
Sequences
Splice sites
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
3' ss Seq
CACAACGCCATCGCCCACAGCGG
3' ss Score
5.67
Exon sequences
Seq C1 exon
TCACCACCTGCCGGGACCCCGGGGACGCCGAGCACAGCCGCAGGGTGGTCTCCAGCCCCAAATTCCCAGTGGGGTCCACCGTGCGCTTCGTCTGCGATAAGGGCTACGTGCTGGCGGGCGCCGGGCTCCTCACCTGCCACGACCGCGCATCGGGGGGACCCAAGTGGAGCGACCGCCTGCCCAAATGCATCC
Seq A exon
GTGAGTCGGGCATCCTGAGCGCACACCCCCATGGCCGGTGGCACGCGGCGGGCGCTGACACAACGCCATCGCCCACAG
Seq C2 exon
CGGAGGCGTACGAGCCATGCCACAACCCCGGCGTGCCCGCGGGCGGGCGGCAGAGCCCCGAGCGGCGGCTGTACCCGGCGGGCAGCACGCTGCGCTTCTCCTGCACCGCTGGGCGGGCGCTGCTGGGTGAGGGCAATCTGCGCTGCCTGCCCGGGCACCCCTCGCGCTGGAGCGGCTCGCCTCCCATCTGCAAGGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026431:ENSGALT00000046159:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.092 A=NA C2=0.164
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.3)
A:
NA
C2:
PF0008415=Sushi=WD(100=86.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTCTCCAGCCCCAAATTC
R:
GGTTGTGGCATGGCTCGTAC
Band lengths:
175-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]