RnoINT0133909 @ rn6
Intron Retention
Gene
ENSRNOG00000009350 | Sez6
Description
seizure related 6 homolog [Source:RGD Symbol;Acc:619780]
Coordinates
chr10:64867783-64868253:-
Coord C1 exon
chr10:64868062-64868253
Coord A exon
chr10:64867981-64868061
Coord C2 exon
chr10:64867783-64867980
Length
81 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
TGAATCTGCCTGCCTTGCAGTGG
3' ss Score
7.45
Exon sequences
Seq C1 exon
TGACATCCTGCCATGACCCAGGGGATGTGGAGCACAGCCGACGCCTCATATCCAGCCTCAAGTTTCCTGTGGGAGCAACTGTGCAGTATATCTGTGACCAGGGTTTTGTGCTCACGGGTAGCGCCATCCTTACTTGCCATGATCGTCAAGCGGGCAGTCCCAAGTGGAGTGACAGGGCCCCCAAGTGTCTCT
Seq A exon
GTAAGTGTACAGTAGGTAGGAGGGGGAAACCTGTAGTAGGAGAAAAACCTGACACCTTCACTGAATCTGCCTGCCTTGCAG
Seq C2 exon
TGGAACAGTTCAAACCATGTCATGGCCTCAGTGCCCCTGAGAATGGTGCCCGCAGCCCTGAGAAGAGGCTCCACCCAGCAGGGGCCACCATTCACTTCTCCTGTGCCCCTGGTTATGTGCTGAAGGGCCAGGCCAGCATCAAATGCGTGCCTGGACACCCCTCACATTGGAGTGATCCTCCACCCATCTGTAGGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009350:ENSRNOT00000048543:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.149
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.3)
A:
NA
C2:
PF0008415=Sushi=WD(100=86.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTAGCGCCATCCTTACTTG
R:
CAGGAGAAGTGAATGGTGGCC
Band lengths:
180-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]