DreINT0133579 @ danRer10
Intron Retention
Gene
ENSDARG00000079414 | sez6b
Description
seizure related 6 homolog b [Source:ZFIN;Acc:ZDB-GENE-110628-3]
Coordinates
chr15:24595103-24597670:+
Coord C1 exon
chr15:24595103-24595294
Coord A exon
chr15:24595295-24597475
Coord C2 exon
chr15:24597476-24597670
Length
2181 bp
Sequences
Splice sites
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
3' ss Seq
TGTATATTTGTGTTGTACAGCGG
3' ss Score
6.38
Exon sequences
Seq C1 exon
TGCTGTCGTGTCCAGACCCGGGCACAGTAGAGCACAGTCGCAGGGTGATGTCGGGGCCGCGTCTCATCGTGGGCTCCACTGTCCAGTACATCTGTAACAAAGGCTACTCGCTGTCAGGAAACAGCCTCCTTTCTTGCTACCACAGAGACTCCACTGGCCCCAAGTGGAGCGAGAAACTGCCCAAATGCATCC
Seq A exon
GTGAGTGACATTTACACACCTAGAGGAAAACCATCTTAAAATAAATGTATTACTATCTTGTGTTACTTCTTTATAAACATAACTAAATTTGTTACTAAGGTACTTTATAAAGAAAGCAATGTGTTATGTTACATTTATGTTACTGTTTTCTTCTTGGGCTGTGATTGATTGCTTGTAAATGTCTGTTTTCCACAAATATAATGGCTTTTAACACGTAAAACTGAAATGTGAAGTAAAAAAAAAGCTCAGGTTGAAACGAATGTAAATTCATGCCTGTAAAGTTAAGGTTCAGCTCAAACAAACCTTTCCTCACACCTGCATTTCTAGATTACGTGAACAATATGATGCATGTGAAAGATACTAGTTAACTAACTTCAACACTGACTATTCTAAAGTTTTATTGTTATTATTTATTTTTAATACTGAATGTTTTATAGAAGTGAGATGAGTAAATCACATTCAAGCCACAATTACAGTAACTGTTTACACATCGTACACAACACATCTGTAAAAACCTATTTTTTAAGTGAGTTAACCCGTTGCCTTGAAATTAAGTAAATGAACTATGTGCATACTTAGAAAAAGTCAACTTGAAGGGGACCTATTAGGCAAAAAACACTTAATAAGAGGTTTGAACACACTTAGGCAAGAGTCTGAGAATATAGTCAGCCTCTAATAGTAAAAATTTATTTATTTTATTTTTTATAATCACACTTCATAAAAAAGTCTGTAGAAACACTTTTATTGACCTTCTCCATTTATACATGTCATCAGTGAGGAAAAGCCCCACCCATTAGGGATGATATCTCTCTCTGGTTAGCATAAACAGCCCTAAGTGAGAAGCAGTCGTCCACCTGTGGTGACATACCTGTGGTATGTGGTAACACATAGGCTTTTATAGCTTCACACTTTTTTGAAAAGAGGGCTGGGTCACAATCTCATTAGAATTTAAAGTGAACGACACAGTTTGGGTCATAGCCTAAAAGGGACAATTTCAAAGAGTTATAAAAAATAATTTATGTGGTATTTTGAGCTGAAACTTCACATATACACTTTAGGAACACCGAAGAGTTATTTCACTTTTTGCAAAAAGAAGTACAATAAGTCCCCTTTTAATAATTCCAGTAACACTTTATTTTGATGGTCCATTTGAGTATTATTGGACTGTCTACTTAATATCTGTTGATATGCTCCTTCAACAGACATTTAACTGACTTTGCAAGTACTTGTCAACTTACACTAAATTAATATAGTGTACTAGATTATACGTAGCCTTAACCCTAACCCCAAGCCTAACCCCAAGCCTAACCCCAAACTAACAGTCTAGTTATAACCTAGTGAGAATTAGTTGCAATGTAACTTTAATTCAACAAACGGACCATCAAAATAAAGTGTGGCCATATTTTCTAGTTACAACACTTTTTTGTTAGTGTAAAGCAACTAATTGCTGTTTATAATGTACACTTATTCCTAATTTCTCTCGACACGAGGACGAAGAGCATTTTTCCTGGTAATTAAAAAGTAGTCTGTACTTTACAAGTTGCTTGAGAGTAATCAGGTTACGTGTAATGCGTTACTCCATACACTGCCTACAAATACATAAACATAATGATTTGTTAACTGTATAATAATTGCAACTTGGTCAACATGCAATGAATTAATTATAGCAGGGGTCACAATGCTCCTGGAGGGCCAGTATCCAGCAGATTATAGCTCCAACTCTTATCAAACACATCTAAACAAGCTAGCCAAGGTCTAACTTGGTATTCTTGAAGGTTTTAGGCAGATGTGATGTGTTGAAGCTTAACTCTGCAGCACACAGGCCCACCAGAACCAGGTTTGGTGACCTTTGCTTTATAGTGTAGATTACTAACTTGATTGAAGACGAGCCATCAAAACATTAACGAAAAAGTGCACATGTAAATGTGTTCATTTTATTTCTCATACTTTATTTTACAAAGTCGTTGTTTCAGTGTAACTAAACATTTCATCACTGAGTCATATGAATTAAGTACATGTATATACTTTGTGGTTAAAATAAGCATAAGTGTTAGATTCAGGGTTAGCTGCATGAAGTTATGTGTACCTATTGTTTATCTTTATCAAACTACAGTACATTGCATTGCTAACTATTCCAAATTTGTGACTGGGTGTGTCTATTTGTATATTTGTGTTGTACAG
Seq C2 exon
CGGATTCGTTTGAGCCGTGCAGGAACCCTGGCACTCCGGCCTACACCATCCAGAGCTCTGAGAAGCACGTGTATCAGGCTGGAGAAACTGTACGCTTCTCCTGCATGAATGGGTACGAGCTCCAGGGCGAACCTGTTCTCCGTTGTGTCCCCGGGCATCCTTCCAAATGGAGTCATCCACCGCCGCTGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079414:ENSDART00000155502:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.3)
A:
NA
C2:
PF0008415=Sushi=WD(100=87.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]